Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 2.4e-78 295.4 146 100.0
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 9.4e-35 150.6 76 92.1
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 3.9e-33 145.2 76 86.8
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 6.7e-33 144.4 76 86.8
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.5e-32 143.3 76 85.5
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 2.5e-32 142.5 76 84.2
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 3.3e-32 142.1 76 84.2
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 1.3e-31 140.2 101 67.3
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.2e-31 139.4 101 67.3
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 2.6e-29 132.5 76 78.9
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 5.9e-29 131.3 76 75.0
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 7.7e-29 131.0 74 77.0
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 2.2e-28 129.4 76 73.7
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 2.9e-28 129.0 76 73.7
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 2.9e-28 129.0 76 73.7
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 2.9e-28 129.0 76 73.7
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 2.9e-28 129.0 76 73.7
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 2.9e-28 129.0 76 73.7
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 2.9e-28 129.0 76 77.6
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 3.8e-28 128.6 76 72.4
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 3.8e-28 128.6 76 72.4
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 3.8e-28 128.6 84 71.4
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 3.8e-28 128.6 84 69.0
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 3.8e-28 128.6 102 58.8
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 5.0e-28 128.3 76 72.4
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.5e-28 127.9 76 72.4
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 6.5e-28 127.9 76 75.0
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 6.5e-28 127.9 84 67.9
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 6.5e-28 127.9 76 75.0
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 8.5e-28 127.5 74 77.0
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 2.5e-27 125.9 76 72.4
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 3.2e-27 125.6 76 73.7
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 3.2e-27 125.6 76 73.7
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 3.2e-27 125.6 76 73.7
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 3.2e-27 125.6 76 73.7
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 3.2e-27 125.6 76 73.7
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 3.2e-27 125.6 76 73.7
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 3.2e-27 125.6 102 59.8
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 3.2e-27 125.6 76 75.0
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.2e-27 125.6 100 61.0
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.2e-27 125.6 100 61.0
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 4.2e-27 125.2 84 70.2
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 5.5e-27 124.8 76 73.7
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 5.5e-27 124.8 75 77.3
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 7.2e-27 124.4 76 72.4
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 7.2e-27 124.4 75 73.3
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 9.4e-27 124.0 76 71.1
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 9.4e-27 124.0 76 69.7
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 1.6e-26 123.2 102 54.9
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 2.1e-26 122.9 76 69.7
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 2.7e-26 122.5 99 60.6
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 2.7e-26 122.5 76 68.4
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 2.7e-26 122.5 76 73.7
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 3.6e-26 122.1 76 71.1
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 3.6e-26 122.1 102 54.9
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 3.6e-26 122.1 101 59.4
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 4.7e-26 121.7 76 68.4
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 4.7e-26 121.7 76 68.4
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 6.1e-26 121.3 100 59.0
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 7.9e-26 120.9 76 68.4
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 7.9e-26 120.9 100 60.0
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 1.0e-25 120.6 76 67.1
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.0e-25 120.6 74 70.3
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.4e-25 120.2 76 69.7
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.4e-25 120.2 76 67.1
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.4e-25 120.2 76 67.1
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 1.4e-25 120.2 76 68.4
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.8e-25 119.8 75 68.0
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.8e-25 119.8 75 68.0
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.8e-25 119.8 75 68.0
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.8e-25 119.8 75 68.0
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 1.8e-25 119.8 102 53.9
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.8e-25 119.8 74 70.3
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 1.8e-25 119.8 74 70.3
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 1.8e-25 119.8 74 70.3
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 3.9e-25 118.6 74 68.9
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 6.7e-25 117.9 102 57.8
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 8.8e-25 117.5 102 54.9
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.1e-24 117.1 76 65.8
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 1.5e-24 116.7 102 53.9
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 2.0e-24 116.3 76 67.1
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 2.6e-24 115.9 94 55.3
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 2.6e-24 115.9 74 66.2
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 2.6e-24 115.9 76 67.1
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.3e-24 115.5 76 68.4
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.3e-24 115.5 76 68.4
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.3e-24 115.5 76 68.4
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 5.7e-24 114.8 73 71.2
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 7.4e-24 114.4 76 65.8
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 7.4e-24 114.4 76 65.8
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 9.7e-24 114.0 74 66.2
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 9.7e-24 114.0 87 58.6
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.3e-23 113.6 76 67.1
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 1.3e-23 113.6 74 67.6
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 2.2e-23 112.8 76 63.2
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 2.2e-23 112.8 76 63.2
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 2.2e-23 112.8 73 68.5
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 2.2e-23 112.8 90 62.2
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 3.7e-23 112.1 76 64.5
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 6.3e-23 111.3 76 64.5
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 8.2e-23 110.9 76 60.5
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 8.2e-23 110.9 76 60.5
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.1e-22 110.5 75 62.7
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.1e-22 110.5 88 62.5
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 3.1e-22 109.0 76 59.2
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 7.0e-22 107.8 92 59.8
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 9.1e-22 107.5 76 63.2
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 1.2e-21 107.1 74 63.5
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 3.4e-21 105.5 74 60.8
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 2.5e-19 99.4 76 55.3
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 3.2e-19 99.0 111 43.2
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.5e-19 98.2 73 58.9
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 9.4e-19 97.4 75 54.7
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 9.4e-19 97.4 76 55.3
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 9.4e-19 97.4 76 55.3
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 3.0e-17 92.4 53 73.6
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 6.7e-17 91.3 60 65.0
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 8.8e-17 90.9 51 74.5
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.7e-16 88.2 51 70.6
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 6.3e-15 84.7 74 45.9
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 2.4e-14 82.8 57 59.6
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 1.3e-12 77.0 76 47.4
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 8.5e-12 74.3 100 43.0
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.5e-11 73.6 75 48.0
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.2e-11 71.2 71 53.5
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.0e-09 67.4 102 40.2
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 2.3e-09 66.2 77 44.2
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 1.5e-08 63.5 82 41.5
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 1.7e-07 60.1 53 50.9
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 4.8e-07 58.5 31 74.2
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-06 56.6 30 73.3


User provided reference genes

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