Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 4.4e-68 261.2 131 100.0
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 2.4e-66 255.4 131 96.9
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 5.8e-60 234.2 127 90.6
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.4e-58 228.8 127 89.8
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 4.1e-58 228.0 127 89.0
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.2e-57 226.5 127 85.8
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.2e-57 226.5 127 85.8
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 1.6e-57 226.1 127 88.2
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 2.1e-57 225.7 127 85.8
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.1e-57 225.7 127 85.8
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 1.0e-56 223.4 127 85.0
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 1.3e-56 223.0 127 85.0
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 2.3e-56 222.2 127 86.6
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 3.9e-56 221.5 124 85.5
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 5.1e-56 221.1 124 85.5
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 5.1e-56 221.1 127 85.0
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 5.1e-56 221.1 127 85.0
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 5.1e-56 221.1 129 84.5
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 6.6e-56 220.7 132 87.1
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 1.5e-55 219.5 126 84.1
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 1.9e-55 219.2 126 84.1
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 4.3e-55 218.0 127 82.7
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 5.6e-55 217.6 129 84.5
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 7.3e-55 217.2 127 81.9
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 9.5e-55 216.9 127 82.7
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 9.5e-55 216.9 127 81.9
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 2.8e-54 215.3 127 81.9
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 3.6e-54 214.9 129 82.9
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.7e-54 214.5 129 81.4
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 8.1e-54 213.8 127 81.9
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.1e-53 213.4 124 82.3
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 1.4e-53 213.0 130 80.8
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 1.4e-53 213.0 127 83.5
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.8e-53 212.6 124 82.3
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.8e-53 212.6 129 80.6
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.8e-53 212.6 129 80.6
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.8e-53 212.6 124 80.6
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 1.8e-53 212.6 127 81.9
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.8e-53 212.6 129 81.4
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.8e-53 212.6 127 81.1
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.1e-53 211.8 129 80.6
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 1.2e-52 209.9 127 79.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 2.0e-52 209.1 124 79.8
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 3.4e-52 208.4 127 79.5
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 78.7
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 79.5
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 5.8e-52 207.6 127 80.3
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 5.8e-52 207.6 127 80.3
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 5.8e-52 207.6 127 78.7
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 7.6e-52 207.2 124 78.2
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 9.9e-52 206.8 118 83.1
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 9.9e-52 206.8 129 79.1
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.3e-51 206.5 118 83.1
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.3e-51 206.5 126 79.4
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 79.5
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 79.5
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 78.0
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 79.5
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 78.0
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 79.5
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 4.9e-51 204.5 125 80.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 8.4e-51 203.8 127 78.0
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 8.4e-51 203.8 124 79.0
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.1e-50 203.4 124 77.4
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.1e-50 203.4 124 77.4
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.4e-50 203.0 130 76.9
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 76.4
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 77.2
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 77.2
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.4e-50 202.2 124 78.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 75.6
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 5.4e-50 201.1 124 75.8
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.4e-50 201.1 127 75.6
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 7.1e-50 200.7 127 77.2
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.2e-50 200.3 127 78.0
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.6e-49 199.5 127 77.2
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 2.1e-49 199.1 127 75.6
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.7e-49 198.7 127 75.6
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.7e-49 198.7 127 75.6
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 2.7e-49 198.7 125 75.2
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 3.5e-49 198.4 127 75.6
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 4.6e-49 198.0 127 75.6
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 4.6e-49 198.0 128 77.3
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 4.6e-49 198.0 124 75.8
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 6.0e-49 197.6 124 76.6
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 7.8e-49 197.2 127 75.6
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 7.8e-49 197.2 127 75.6
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 7.8e-49 197.2 127 75.6
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.8e-49 197.2 124 75.8
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 7.8e-49 197.2 128 77.3
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.0e-48 196.8 128 76.6
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.0e-48 196.8 124 76.6
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 75.6
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 1.7e-48 196.1 127 74.8
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.7e-48 196.1 127 74.8
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.7e-48 196.1 128 75.8
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.3e-48 195.7 128 75.8
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 3.0e-48 195.3 127 74.0
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 3.0e-48 195.3 124 75.0
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 3.9e-48 194.9 127 74.8
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 8.6e-48 193.7 124 75.0
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 1.1e-47 193.4 127 74.8
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 2.5e-47 192.2 128 71.9
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.3e-47 191.8 128 76.6
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 7.3e-47 190.7 128 73.4
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 7.3e-47 190.7 124 72.6
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 2.8e-46 188.7 127 76.4
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.8e-46 188.7 124 72.6
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 2.8e-46 188.7 127 74.8
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.1e-45 186.8 109 78.0
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.4e-42 175.6 106 79.2
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 3.5e-41 171.8 171 55.6
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.7e-40 169.5 96 80.2
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 3.0e-40 168.7 127 69.3
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.7e-35 152.9 103 73.8
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 6.4e-35 151.0 87 85.1
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.1e-33 146.0 82 81.7
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.3e-31 138.7 82 78.0
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 8.4e-27 124.0 79 79.7
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 3.2e-26 122.1 103 61.2
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.3e-24 116.7 88 60.2
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.8e-24 116.3 76 72.4
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 3.0e-24 115.5 89 65.2
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 9.6e-23 110.5 129 52.7
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.1e-21 105.5 61 82.0
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.5e-20 103.2 69 72.5
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.3e-19 100.1 57 84.2
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.7e-19 99.8 69 72.5
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 1.7e-19 99.8 82 56.1
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 7.4e-15 84.3 51 84.3
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 2.1e-14 82.8 97 48.5
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 4.8e-14 81.6 116 49.1
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.9e-09 64.3 40 70.0
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 1.8e-08 63.2 59 47.5
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 5.1e-08 61.6 36 80.6


User provided reference genes

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