Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.4e-56 222.6 107 100.0
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 6.6e-54 213.8 119 89.9
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 6.6e-54 213.8 119 89.9
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.5e-42 176.0 119 78.2
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 4.4e-42 174.5 118 74.6
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 9.9e-42 173.3 119 76.5
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.7e-41 172.6 117 75.2
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 6.4e-41 170.6 118 75.4
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 8.4e-41 170.2 119 76.5
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.4e-40 169.5 119 74.8
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.9e-40 169.1 118 73.7
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 2.4e-40 168.7 119 73.1
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 2.4e-40 168.7 118 72.9
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.4e-40 168.7 118 72.9
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 2.4e-40 168.7 119 70.6
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 3.2e-40 168.3 118 73.7
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 3.2e-40 168.3 118 73.7
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 3.2e-40 168.3 118 73.7
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 3.2e-40 168.3 118 72.9
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 4.1e-40 167.9 118 72.9
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 5.4e-40 167.5 118 72.9
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 5.4e-40 167.5 118 73.7
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.4e-40 167.5 117 70.9
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 7.1e-40 167.2 118 74.6
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 9.2e-40 166.8 117 73.5
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.2e-39 166.4 118 72.0
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 1.2e-39 166.4 119 71.4
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.2e-39 166.4 117 74.4
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.2e-39 166.4 118 71.2
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.6e-39 166.0 119 72.3
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.6e-39 166.0 119 73.1
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.6e-39 166.0 118 72.0
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 1.6e-39 166.0 117 73.5
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.1e-39 165.6 118 72.0
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 2.1e-39 165.6 119 72.3
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 2.7e-39 165.2 117 72.6
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 3.5e-39 164.9 119 70.6
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 3.5e-39 164.9 118 72.0
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 4.6e-39 164.5 118 69.5
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 4.6e-39 164.5 119 70.6
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 4.6e-39 164.5 118 72.9
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 6.0e-39 164.1 120 72.5
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 7.8e-39 163.7 119 71.4
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.0e-38 163.3 118 70.3
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.3e-38 162.9 119 71.4
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.7e-38 162.5 119 71.4
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.7e-38 162.5 119 71.4
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.7e-38 162.5 119 71.4
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 2.3e-38 162.2 119 70.6
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 2.3e-38 162.2 117 71.8
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.9e-38 161.4 119 69.7
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 3.9e-38 161.4 119 70.6
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 3.9e-38 161.4 119 70.6
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 3.9e-38 161.4 119 70.6
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 5.1e-38 161.0 118 68.6
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 5.1e-38 161.0 119 72.3
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 8.6e-38 160.2 119 68.9
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 8.6e-38 160.2 127 66.9
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-37 159.8 118 70.3
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.1e-37 159.8 119 65.5
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.9e-37 159.1 119 68.9
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.5e-37 158.7 118 68.6
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 2.5e-37 158.7 118 69.5
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 3.3e-37 158.3 115 71.3
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 3.3e-37 158.3 116 69.8
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 3.3e-37 158.3 121 69.4
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 4.3e-37 157.9 116 69.8
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 4.3e-37 157.9 118 67.8
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 4.3e-37 157.9 118 68.6
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 5.6e-37 157.5 115 67.0
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 5.6e-37 157.5 117 66.7
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 7.3e-37 157.1 121 69.4
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 9.6e-37 156.8 117 65.8
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 9.6e-37 156.8 117 65.8
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 9.6e-37 156.8 117 65.8
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 9.6e-37 156.8 117 65.8
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 9.6e-37 156.8 118 67.8
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.2e-36 156.4 119 68.1
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.6e-36 156.0 119 65.5
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.1e-36 155.6 117 68.4
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 2.8e-36 155.2 117 65.0
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 2.8e-36 155.2 117 65.0
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 3.6e-36 154.8 117 65.0
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 3.6e-36 154.8 117 65.0
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 3.6e-36 154.8 117 65.0
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.6e-36 154.8 118 68.6
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 4.7e-36 154.5 117 65.8
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 4.7e-36 154.5 114 67.5
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 6.2e-36 154.1 118 66.1
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 6.2e-36 154.1 119 63.0
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 8.1e-36 153.7 117 64.1
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 8.1e-36 153.7 117 64.1
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 8.1e-36 153.7 117 65.0
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.1e-35 153.3 115 69.6
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.8e-35 152.5 118 67.8
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 3.1e-35 151.8 119 65.5
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.0e-35 151.4 117 65.8
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 4.0e-35 151.4 118 66.1
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 4.0e-35 151.4 118 66.1
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 4.0e-35 151.4 118 66.1
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 4.0e-35 151.4 118 66.1
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 4.0e-35 151.4 118 66.1
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 5.2e-35 151.0 117 63.2
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 5.2e-35 151.0 128 60.9
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 6.9e-35 150.6 115 66.1
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 6.9e-35 150.6 116 66.4
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 2.0e-34 149.1 117 63.2
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 2.0e-34 149.1 118 65.3
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 2.6e-34 148.7 117 65.0
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 2.2e-33 145.6 118 64.4
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 2.9e-33 145.2 133 56.4
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 2.9e-33 145.2 167 50.3
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 3.8e-33 144.8 101 70.3
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 8.4e-33 143.7 117 63.2
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 7.1e-32 140.6 117 61.5
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 7.1e-32 140.6 117 61.5
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.2e-31 139.8 90 78.9
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.2e-31 139.8 119 62.2
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 1.6e-31 139.4 117 62.4
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.0e-30 136.7 89 77.5
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.0e-30 136.7 89 77.5
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.0e-30 136.7 118 60.2
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.3e-30 136.3 88 76.1
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.7e-30 136.0 88 75.0
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 8.7e-30 133.7 115 64.3
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.5e-29 132.9 110 64.5
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 4.3e-29 131.3 98 72.4
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 9.6e-29 130.2 89 73.0
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 9.6e-29 130.2 90 71.1
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.6e-28 129.4 88 71.6
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 4.8e-28 127.9 88 70.5
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 9.9e-26 120.2 112 51.8
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 4.2e-24 114.8 116 50.9
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 1.2e-23 113.2 116 48.3
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 1.6e-23 112.8 90 65.6
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 2.1e-23 112.5 108 53.7
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 6.0e-23 110.9 114 48.2
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.1e-21 106.7 55 85.5
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 6.2e-20 100.9 52 86.5
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.4e-19 99.0 107 48.6
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 6.9e-19 97.4 68 64.7
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.5e-18 96.3 50 86.0
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 5.8e-18 94.4 51 78.4
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.1e-13 80.1 63 66.7
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 7.4e-13 77.4 53 73.6
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.1e-12 75.9 65 66.2
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 2.8e-12 75.5 63 66.7
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 6.2e-12 74.3 70 61.4
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 8.2e-12 73.9 63 65.1
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 8.2e-12 73.9 63 65.1
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 2.4e-11 72.4 59 66.1
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 4.0e-11 71.6 59 66.1
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.3e-11 71.2 63 60.3
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 2.0e-10 69.3 55 69.1
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 5.8e-10 67.8 60 61.7
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 7.6e-10 67.4 133 36.1
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.4e-08 63.2 57 59.6
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 6.7e-06 54.3 105 34.3
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 8.7e-06 53.9 98 40.8


User provided reference genes

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