Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 7.4e-138 493.8 240 100.0
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 4.4e-122 441.4 240 87.9
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 1.7e-121 439.5 240 87.5
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 8.2e-121 437.2 240 86.7
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 2.9e-118 428.7 240 85.0
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 1.1e-117 426.8 231 87.0
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 2.5e-117 425.6 240 84.6
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 2.1e-116 422.5 240 83.8
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 8.8e-115 417.2 242 84.3
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 4.4e-114 414.8 242 83.9
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 6.3e-113 411.0 233 84.5
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 7.7e-103 377.5 242 74.4
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 2.1e-100 369.4 232 72.8
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 2.1e-100 369.4 232 74.6
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 2.1e-100 369.4 238 74.4
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 2.1e-100 369.4 232 74.1
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 9.8e-98 360.5 242 71.5
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.2e-97 359.4 241 73.9
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.8e-97 359.0 232 71.6
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 3.7e-97 358.6 232 72.4
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.7e-97 358.6 232 71.6
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 6.3e-97 357.8 232 71.6
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 6.3e-97 357.8 232 75.0
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 1.8e-96 356.3 232 71.1
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 1.7e-94 349.7 229 71.2
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 1.7e-94 349.7 232 71.1
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 2.9e-94 349.0 237 68.8
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 3.8e-94 348.6 229 69.4
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 1.5e-93 346.7 226 72.1
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 1.5e-93 346.7 230 70.0
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 2.5e-93 345.9 228 69.7
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 4.3e-93 345.1 241 68.9
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 7.3e-93 344.4 227 68.7
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 1.2e-92 343.6 230 69.6
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 2.1e-92 342.8 230 70.4
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 2.1e-92 342.8 231 69.3
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 2.8e-92 342.4 237 67.5
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 4.7e-92 341.7 229 69.0
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 1.0e-91 340.5 239 66.1
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 1.4e-91 340.1 228 70.6
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 4.0e-91 338.6 229 69.9
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 4.0e-91 338.6 187 85.0
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 2.6e-90 335.9 237 65.8
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 5.7e-90 334.7 234 65.8
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 9.8e-90 334.0 234 65.4
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 8.3e-89 330.9 230 70.0
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 3.2e-88 328.9 243 66.7
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 9.2e-88 327.4 230 66.1
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.2e-87 327.0 248 63.7
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.2e-87 327.0 248 63.3
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 2.7e-87 325.9 229 66.8
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 7.8e-87 324.3 234 67.9
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 7.8e-87 324.3 233 66.1
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 1.0e-86 323.9 230 64.8
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 1.3e-86 323.6 226 68.1
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 2.3e-86 322.8 225 64.4
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 3.9e-86 322.0 234 67.5
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 4.3e-85 318.5 229 64.6
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 1.2e-84 317.0 241 63.9
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 3.6e-84 315.5 227 66.5
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 3.6e-84 315.5 228 66.7
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 8.0e-84 314.3 227 66.5
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 1.0e-83 313.9 230 65.7
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 1.8e-83 313.2 220 68.2
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 1.8e-83 313.2 227 66.5
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 2.3e-83 312.8 221 66.5
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 2.3e-83 312.8 230 63.9
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 4.0e-83 312.0 241 63.1
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 5.2e-83 311.6 230 64.8
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 5.2e-83 311.6 230 65.2
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 6.8e-83 311.2 227 64.3
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 6.8e-83 311.2 241 63.1
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 5.8e-82 308.1 227 64.8
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 9.8e-82 307.4 243 62.6
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 9.8e-82 307.4 242 62.8
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 1.3e-81 307.0 229 62.4
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 1.3e-81 307.0 227 65.6
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 2.2e-81 306.2 231 64.5
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 2.9e-81 305.8 231 64.1
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 2.9e-81 305.8 237 62.9
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 4.9e-81 305.1 231 64.5
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 4.9e-81 305.1 242 62.4
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 4.9e-81 305.1 229 62.0
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 1.9e-80 303.1 242 61.6
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 2.4e-80 302.8 217 65.9
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 4.1e-80 302.0 231 63.2
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 1.0e-78 297.4 233 62.7
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 5.0e-78 295.0 221 62.4
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 4.0e-75 285.4 192 68.8
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 1.3e-73 280.4 221 58.8
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 3.7e-73 278.9 239 58.6
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 5.2e-67 258.5 213 61.5
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 4.1e-64 248.8 150 76.7
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 3.5e-63 245.7 206 56.8
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 7.8e-63 244.6 257 49.0
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 8.6e-62 241.1 176 63.6
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 2.7e-55 219.5 248 48.0
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 1.0e-54 217.6 203 53.2
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 1.7e-49 200.3 153 63.4
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 1.9e-48 196.8 153 62.1
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 2.9e-41 172.9 103 80.6
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 2.9e-41 172.9 100 81.0
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 3.2e-40 169.5 167 52.1
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 2.1e-39 166.8 205 42.0
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 1.3e-33 147.5 99 72.7
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 3.0e-30 136.3 144 45.8
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 8.2e-28 128.3 91 68.1
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 6.9e-27 125.2 202 39.1
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 1.6e-23 114.0 159 40.3
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 4.5e-18 95.9 239 28.9
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 1.4e-16 90.9 163 37.4
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 6.9e-11 72.0 48 62.5
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 2.5e-08 63.5 50 68.0


User provided reference genes

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