Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 0.0e+00 1093.2 535 100.0
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 1.9e-290 1001.9 535 90.7
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 7.8e-289 996.5 535 89.9
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 7.8e-289 996.5 535 89.0
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.0e-288 996.1 535 89.7
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 3.0e-288 994.6 535 88.6
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 5.1e-288 993.8 535 88.4
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 1.5e-287 992.3 535 89.7
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.8e-285 985.3 535 88.2
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 1.5e-284 982.2 535 88.8
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 7.6e-284 979.9 535 87.9
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 6.2e-278 960.3 535 85.8
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 2.6e-276 954.9 535 85.6
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 4.5e-276 954.1 535 85.2
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 5.8e-276 953.7 535 84.9
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 9.9e-276 953.0 537 86.6
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 9.9e-276 953.0 534 85.6
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.3e-275 952.6 537 86.6
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 2.9e-275 951.4 535 85.6
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 6.4e-275 950.3 535 85.0
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 8.4e-275 949.9 535 84.9
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 1.4e-274 949.1 535 84.5
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 1.2e-273 946.0 535 84.9
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 2.1e-273 945.3 535 84.3
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 7.9e-273 943.3 535 84.9
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 7.9e-273 943.3 535 84.9
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 1.3e-272 942.6 535 83.6
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 3.9e-272 941.0 535 84.1
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 5.1e-272 940.6 535 83.7
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 6.7e-272 940.3 535 84.5
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.5e-271 939.1 535 84.1
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.9e-271 938.7 535 84.5
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.9e-271 938.7 535 84.5
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.3e-271 937.9 535 84.3
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 5.6e-271 937.2 535 84.3
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.1e-270 935.3 535 84.1
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 2.1e-270 935.3 535 83.4
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 2.8e-270 934.9 536 83.6
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.7e-270 934.5 535 83.4
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.7e-270 934.5 535 83.4
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.7e-270 934.5 535 84.1
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 3.7e-270 934.5 542 83.6
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.1e-269 932.9 535 82.8
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.8e-269 932.2 535 83.9
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.4e-269 931.8 535 83.7
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 4.0e-269 931.0 536 82.3
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 4.0e-269 931.0 534 83.7
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 4.0e-269 931.0 535 82.8
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 6.9e-269 930.2 535 83.6
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.0e-268 928.7 535 83.0
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 4.5e-268 927.5 536 83.0
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 7.6e-268 926.8 536 84.0
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.0e-267 926.4 530 83.2
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 1.7e-267 925.6 535 83.2
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.7e-267 925.6 535 83.2
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 8.4e-267 923.3 529 83.9
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 1.1e-266 922.9 535 81.9
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.4e-266 922.5 529 83.2
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.2e-266 921.0 536 82.6
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 1.2e-265 919.5 540 81.1
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 2.1e-265 918.7 536 81.5
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 3.5e-265 917.9 529 82.6
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 4.6e-265 917.5 535 82.2
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.9e-264 914.4 535 81.7
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 3.3e-263 911.4 534 81.3
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 4.3e-263 911.0 536 80.8
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.3e-262 909.4 535 81.7
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 1.3e-262 909.4 535 81.7
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.3e-262 909.4 535 81.9
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 1.6e-262 909.1 536 81.9
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 2.1e-262 908.7 533 81.6
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 2.8e-262 908.3 535 81.3
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 3.7e-262 907.9 535 81.5
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 4.8e-262 907.5 535 81.3
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 6.3e-262 907.1 535 82.4
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 6.3e-262 907.1 535 81.1
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 8.2e-262 906.7 533 81.2
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 6.9e-261 903.7 535 80.9
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 9.0e-261 903.3 535 81.3
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.2e-260 902.9 537 79.1
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 2.6e-260 901.7 535 80.9
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 5.9e-260 900.6 535 81.3
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 5.9e-260 900.6 535 80.2
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 7.6e-260 900.2 535 81.3
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 1.0e-259 899.8 536 81.5
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 7.2e-258 893.6 494 87.9
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 7.2e-258 893.6 537 79.3
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 1.2e-257 892.9 537 79.5
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 3.6e-257 891.3 537 79.3
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.5e-255 885.9 530 79.6
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 7.4e-255 883.6 536 79.1
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 2.8e-254 881.7 536 79.9
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 6.3e-254 880.6 536 79.5
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 6.3e-254 880.6 535 77.6
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 1.4e-253 879.4 536 78.2
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 6.9e-253 877.1 536 79.3
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 6.9e-253 877.1 535 77.2
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 9.1e-253 876.7 528 78.8
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 1.2e-252 876.3 535 77.2
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 1.3e-251 872.8 529 77.5
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.9e-250 869.0 537 78.4
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 1.2e-249 866.3 496 85.3
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.2e-249 866.3 558 75.8
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 3.6e-249 864.8 558 75.4
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 5.1e-248 860.9 682 65.1
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 8.8e-248 860.1 533 78.4
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 2.6e-247 858.6 530 77.4
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.3e-246 856.3 535 78.3
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 6.3e-246 854.0 528 76.7
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.4e-245 852.8 528 76.3
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.9e-242 842.4 493 83.2
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 4.4e-239 831.2 666 64.9
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 9.4e-234 813.5 559 70.3
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 2.2e-230 802.4 539 71.8
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 3.1e-229 798.5 525 71.2
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.0e-227 793.5 531 69.7
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 3.2e-226 788.5 530 70.0
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.8e-224 782.7 535 69.0
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.3e-222 776.5 526 69.8
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.7e-214 749.6 536 71.1
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.2e-207 726.9 531 63.5
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 1.8e-205 719.5 441 79.6
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 3.5e-204 715.3 527 64.3
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.6e-201 705.3 404 81.4
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.1e-197 693.7 525 64.0
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 1.9e-194 682.9 363 88.2
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 6.4e-190 667.9 497 65.4
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 3.4e-183 645.6 495 67.3
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 5.1e-171 605.1 422 71.8
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 1.2e-159 567.4 710 49.2
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.2e-134 483.4 539 49.7
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 6.5e-134 481.9 299 76.6
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 3.8e-126 456.1 312 71.2
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 7.2e-125 451.8 537 48.4
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 9.8e-106 388.3 411 51.6
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 6.5e-102 375.6 262 71.0
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 3.6e-76 290.0 184 75.5
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 9.2e-72 275.4 148 87.8
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 3.5e-63 246.9 148 75.7
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.4e-43 181.8 135 65.9
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 7.6e-42 176.0 166 53.6
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 2.1e-39 167.9 104 78.8
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.5e-37 161.8 95 78.9
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 5.3e-35 153.3 103 71.8
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 1.5e-34 151.8 93 78.5
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.4e-19 102.1 97 59.8
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 1.0e-17 95.9 46 93.5
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.1e-13 82.4 126 44.4
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 2.6e-13 81.3 45 84.4
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 3.7e-12 77.4 44 84.1
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 3.7e-12 77.4 44 84.1
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 7.0e-11 73.2 52 69.2
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 5.9e-10 70.1 48 77.1
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 1.3e-09 68.9 49 63.3
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 1.7e-09 68.6 41 78.0
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 1.7e-09 68.6 41 78.0
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 1.7e-09 68.6 41 78.0
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 2.2e-09 68.2 75 60.0
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.6e-07 62.0 41 70.7
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 2.1e-07 61.6 38 76.3
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 2.1e-07 61.6 38 76.3
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 2.1e-07 61.6 49 61.2


User provided reference genes

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