Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1552.7 777 100.0
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1383.2 779 87.9
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1369.8 781 88.3
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 0.0e+00 1365.5 790 86.5
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1357.4 779 87.8
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 0.0e+00 1338.9 777 86.0
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1315.1 779 83.4
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 0.0e+00 1303.5 779 84.9
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1300.8 804 80.7
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 0.0e+00 1292.7 779 84.5
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1233.0 778 79.0
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1233.0 778 79.0
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1184.9 779 76.4
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1169.1 778 75.3
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1168.7 779 74.8
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1162.5 779 75.0
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1160.6 779 74.3
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1152.9 780 74.9
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1151.3 779 74.2
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1149.4 779 73.8
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1146.3 797 73.5
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1145.2 780 74.4
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1136.7 779 74.2
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1135.9 781 73.9
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1133.6 778 73.5
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1131.7 777 73.6
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 0.0e+00 1131.3 773 73.2
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1125.9 788 72.8
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1125.5 779 73.0
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1123.6 777 73.0
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1117.8 780 72.3
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1115.5 778 72.5
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1112.1 784 71.9
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 0.0e+00 1099.0 749 74.0
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 0.0e+00 1090.9 780 71.2
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 0.0e+00 1086.2 776 69.6
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1084.7 780 71.5
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 0.0e+00 1079.7 870 64.6
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 0.0e+00 1075.5 778 69.3
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 5.3e-312 1073.5 778 69.0
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 3.1e-310 1068.1 779 69.7
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.5e-309 1065.8 781 68.6
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.8e-309 1063.9 777 69.8
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 1.7e-308 1062.4 778 68.1
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 2.2e-308 1062.0 773 68.8
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 8.4e-308 1060.1 882 63.7
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 4.2e-307 1057.7 779 69.3
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 1.6e-306 1055.8 780 67.3
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 2.7e-306 1055.0 781 68.2
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.0e-305 1053.1 773 67.8
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.3e-305 1052.0 773 68.3
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 2.3e-305 1052.0 776 67.4
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 6.6e-305 1050.4 773 68.0
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 1.9e-304 1048.9 781 67.9
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 5.6e-304 1047.3 782 68.8
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 5.6e-304 1047.3 782 68.8
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 7.3e-304 1047.0 779 67.4
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 9.6e-304 1046.6 780 67.2
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.6e-303 1045.8 774 67.6
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 3.6e-303 1044.6 780 67.2
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 2.4e-302 1042.0 780 67.6
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 3.1e-302 1041.6 774 67.6
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 6.9e-302 1040.4 779 68.0
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 9.0e-302 1040.0 783 66.8
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 1.3e-300 1036.2 773 66.6
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 2.2e-300 1035.4 779 68.0
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 2.2e-300 1035.4 781 67.5
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 3.0e-297 1025.0 840 63.5
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 3.3e-296 1021.5 881 61.0
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 3.3e-296 1021.5 779 66.9
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 2.1e-295 1018.8 779 67.1
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 2.1e-295 1018.8 781 66.7
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 5.3e-294 1014.2 767 65.7
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 9.0e-294 1013.4 778 65.8
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 2.0e-293 1012.3 800 64.9
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 2.5e-291 1005.4 777 66.3
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 7.1e-291 1003.8 742 69.5
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 8.7e-289 996.9 724 70.4
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 4.6e-282 974.5 777 63.3
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 3.9e-281 971.5 778 62.1
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 3.3e-272 941.8 539 88.7
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 2.2e-271 939.1 785 61.0
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.0e-269 932.6 747 61.8
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 9.4e-267 923.7 782 61.4
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 7.7e-261 904.0 783 59.4
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 9.7e-256 887.1 797 58.3
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 2.0e-248 862.8 780 57.9
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 2.5e-219 766.1 771 51.9
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 4.4e-216 755.4 532 72.6
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.1e-211 740.7 497 71.8
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 4.9e-191 672.2 776 49.1
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.9e-188 662.5 479 69.5
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 8.1e-186 654.8 593 59.9
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.5e-179 634.0 435 69.9
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 2.6e-160 570.1 794 40.7
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 2.2e-154 550.4 519 56.6
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 2.6e-152 543.5 795 40.4
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.7e-146 524.2 404 66.1
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.8e-138 496.1 502 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 3.4e-115 420.2 749 35.5
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 6.4e-114 416.0 267 79.8
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.2e-109 401.7 837 32.7
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 3.7e-106 390.2 442 51.1
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.9e-102 377.9 447 49.0
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 6.2e-101 372.9 190 89.5
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 3.2e-97 360.5 380 51.3
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-88 331.3 256 65.2
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 6.6e-87 326.2 379 48.5
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-77 295.4 187 75.4
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 5.3e-68 263.5 394 38.8
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 9.0e-68 262.7 229 57.2
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 5.1e-55 220.3 770 26.2
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 1.3e-50 205.7 174 66.1
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 7.7e-43 179.9 325 39.4
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 6.1e-40 170.2 472 27.8
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 4.3e-38 164.1 225 40.9
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 6.3e-37 160.2 258 39.1
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.3e-34 152.5 107 63.6
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 1.6e-32 145.6 517 25.0
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 6.7e-31 140.2 162 48.1
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 7.4e-30 136.7 86 72.1
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.7e-29 134.4 80 80.0
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.4e-28 132.5 71 83.1
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 1.8e-28 132.1 510 25.1
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.0e-28 130.2 80 78.8
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 2.6e-27 128.3 105 61.9
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 4.5e-27 127.5 109 56.0
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.9e-27 127.1 84 72.6
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.5e-26 123.6 61 91.8
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 6.5e-26 123.6 109 55.0
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.1e-25 122.9 80 75.0
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.5e-25 122.5 84 70.2
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.5e-25 120.6 106 58.5
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 5.5e-25 120.6 153 44.4
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.6e-24 119.0 75 76.0
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 8.0e-24 116.7 92 62.0
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 1.8e-23 115.5 61 86.9
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 3.0e-23 114.8 61 80.3
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.0e-19 102.1 61 78.7
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.1e-17 96.3 55 80.0
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 9.4e-17 93.2 77 57.1
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 2.7e-16 91.7 61 67.2
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 3.6e-16 91.3 57 77.2
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.6e-16 91.3 66 66.7
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.0e-15 89.7 65 66.2
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.8e-13 81.6 80 58.8
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 6.3e-13 80.5 80 50.0
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-12 79.3 55 69.1
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.4e-12 77.4 55 67.3
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.1e-12 76.6 61 60.7
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.5e-10 70.5 60 60.0
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.0e-08 63.5 80 47.5
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.0e-07 63.2 31 90.3
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 1.0e-07 63.2 44 70.5
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 2.0e-06 58.9 31 77.4
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.4e-06 58.2 79 41.8
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 5.7e-06 57.4 59 40.7


User provided reference genes

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