Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 8.0e-132 473.8 241 100.0
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 2.2e-97 359.4 240 77.5
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 4.1e-96 355.1 240 74.2
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 1.7e-94 349.7 240 75.4
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 5.0e-94 348.2 240 75.0
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 3.9e-78 295.4 243 66.3
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 7.3e-77 291.2 244 67.6
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 9.3e-72 274.2 251 59.0
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 1.3e-68 263.8 224 66.5
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 2.1e-68 263.1 171 76.0
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 1.1e-67 260.8 249 55.8
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 4.0e-67 258.8 293 51.9
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 9.0e-67 257.7 252 56.7
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 7.6e-66 254.6 254 55.9
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 2.2e-65 253.1 251 54.6
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 4.2e-64 248.8 236 55.5
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 1.6e-63 246.9 248 54.8
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 2.1e-63 246.5 248 54.8
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 2.7e-63 246.1 243 53.5
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 2.7e-63 246.1 236 55.9
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 3.0e-62 242.7 236 55.1
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 3.9e-62 242.3 248 54.4
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 2.8e-60 236.1 254 52.8
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 1.1e-59 234.2 251 55.0
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 1.1e-59 234.2 236 54.2
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 1.8e-59 233.4 249 51.0
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 2.4e-59 233.0 239 52.3
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 2.4e-59 233.0 249 51.0
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 9.0e-59 231.1 247 50.6
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 1.2e-58 230.7 246 52.0
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 2.0e-58 229.9 241 51.0
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 4.5e-58 228.8 257 51.4
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 1.3e-57 227.3 246 49.6
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 1.7e-57 226.9 250 53.2
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 2.2e-57 226.5 260 48.1
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 6.4e-57 224.9 244 50.8
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 8.4e-57 224.6 246 48.8
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 1.4e-56 223.8 240 52.5
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 1.4e-56 223.8 240 51.2
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 2.4e-56 223.0 254 50.8
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 7.1e-56 221.5 231 55.0
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 8.7e-54 214.5 254 48.8
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 8.7e-54 214.5 245 49.8
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 1.9e-53 213.4 258 47.3
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 4.3e-53 212.2 245 49.8
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 4.3e-53 212.2 245 48.6
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 9.6e-53 211.1 254 46.1
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 6.2e-52 208.4 243 54.3
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 6.2e-52 208.4 259 47.9
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 2.6e-50 203.0 245 47.8
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 2.5e-48 196.4 213 52.1
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 7.1e-48 194.9 250 44.8
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 1.6e-47 193.7 254 46.9
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 1.6e-47 193.7 244 48.0
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 6.0e-47 191.8 266 46.2
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 1.0e-46 191.0 242 46.7
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 1.0e-46 191.0 233 47.2
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 1.8e-46 190.3 273 43.2
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 8.7e-46 188.0 173 53.8
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 3.3e-45 186.0 243 46.9
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 5.7e-45 185.3 368 35.6
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 1.3e-44 184.1 242 47.1
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 1.6e-44 183.7 155 61.3
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 2.8e-44 183.0 266 44.0
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 3.7e-44 182.6 243 46.5
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 4.8e-44 182.2 170 54.1
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 8.2e-44 181.4 250 42.4
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 1.1e-43 181.0 242 45.9
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.1e-43 181.0 266 42.9
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 1.1e-43 181.0 266 42.9
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 2.4e-43 179.9 266 42.9
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 1.5e-42 177.2 243 44.0
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 1.5e-42 177.2 243 44.0
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 2.6e-42 176.4 305 40.0
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 2.6e-42 176.4 237 48.5
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 3.4e-42 176.0 243 43.6
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 4.5e-42 175.6 245 44.9
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 1.3e-41 174.1 242 44.6
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 1.1e-40 171.0 151 55.0
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 1.4e-40 170.6 246 43.9
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 2.7e-39 166.4 209 45.5
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 1.3e-38 164.1 259 40.5
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 1.8e-35 153.7 103 71.8
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 4.1e-35 152.5 259 40.9
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 7.7e-34 148.3 181 45.3
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 2.9e-33 146.4 237 40.1
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 7.2e-32 141.7 274 35.0
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 1.4e-30 137.5 156 49.4
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 2.3e-30 136.7 204 38.2
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 6.7e-30 135.2 180 38.3
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 4.4e-29 132.5 184 43.5
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 4.4e-29 132.5 260 34.6
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 7.4e-29 131.7 269 33.5
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 5.3e-27 125.6 263 32.7
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 1.2e-26 124.4 165 45.5
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 1.5e-26 124.0 114 53.5
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 3.4e-26 122.9 185 41.1
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 4.5e-26 122.5 252 34.9
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 7.2e-24 115.2 149 45.0
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 2.1e-23 113.6 112 50.0
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 1.4e-22 110.9 149 45.6
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 8.8e-22 108.2 85 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 1.5e-21 107.5 211 32.2
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 8.2e-20 101.7 262 28.2
arahy.Tifrunner.gnm1.ann1.LBHD5T Arachis hypogaea HOM05D007225 ORTHO05D009062 7.0e-19 98.6 148 44.6
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 3.5e-10 69.7 104 35.6
SHI11459 Sapria himalayana HOM05D038817 ORTHO05D009062 2.1e-07 60.5 48 64.6
Peaxi162Scf00172g00068 Petunia axillaris HOM05D007225 ORTHO05D009062 3.6e-07 59.7 79 45.6
GSVIVG01022344001 Vitis vinifera HOM05D007225 ORTHO05D009062 3.0e-06 56.6 103 39.8


User provided reference genes

Program Settings