Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0008013 Lotus japonicus HOM05D007939 ORTHO05D010027 1.3e-24 115.5 58 100.0
Glyma.05G032500 Glycine max HOM05D007939 ORTHO05D010027 8.0e-22 106.3 58 87.9
Phvul.003G196000 Phaseolus vulgaris HOM05D007939 ORTHO05D010027 8.9e-21 102.8 58 86.2
Lalb_Chr13g0298021 Lupinus albus HOM05D007939 ORTHO05D010027 1.5e-20 102.1 58 84.5
Cfa019042 Carpinus fangiana HOM05D007939 ORTHO05D010027 1.1e-18 95.9 58 79.3
Nn3g17057 Nelumbo nucifera HOM05D007939 ORTHO05D010027 3.2e-18 94.4 55 80.0
Nn4g22962 Nelumbo nucifera HOM05D007939 ORTHO05D010027 3.2e-18 94.4 55 80.0
Ciclev10023252m.g Citrus clementina HOM05D007939 ORTHO05D010027 5.4e-18 93.6 56 76.8
Prupe.5G181400 Prunus persica HOM05D007939 ORTHO05D010027 9.2e-18 92.8 58 75.9
CiPaw.11G033900 Carya illinoinensis HOM05D007939 ORTHO05D010027 3.5e-17 90.9 58 74.1
Potri.012G074300 Populus trichocarpa HOM05D007939 ORTHO05D010027 3.5e-17 90.9 56 76.8
Manes.14G071800 Manihot esculenta HOM05D007939 ORTHO05D010027 7.8e-17 89.7 56 71.4
MD14G1189000 Malus domestica HOM05D007939 ORTHO05D010027 1.3e-16 89.0 59 76.3
Lj9A455T57 Lonicera japonica HOM05D007939 ORTHO05D010027 5.0e-16 87.0 58 67.2
Medtr4g107140 Medicago truncatula HOM05D007939 ORTHO05D010027 8.6e-16 86.3 45 86.7
Hund02701 Selenicereus undatus HOM05D007939 ORTHO05D010027 1.9e-15 85.1 55 70.9
BcaB01g00871 Brassica carinata HOM05D007939 ORTHO05D010027 4.3e-15 84.0 56 67.9
CARHR156540 Cardamine hirsuta HOM05D007939 ORTHO05D010027 4.3e-15 84.0 55 70.9
C03p72070 Brassica napus HOM05D007939 ORTHO05D010027 5.6e-15 83.6 55 69.1
BolC3t19505H Brassica oleracea HOM05D007939 ORTHO05D010027 5.6e-15 83.6 55 69.1
BraA06t25058Z Brassica rapa HOM05D007939 ORTHO05D010027 5.6e-15 83.6 55 69.1
Thhalv10010893m.g Eutrema salsugineum HOM05D007939 ORTHO05D010027 9.5e-15 82.8 55 70.9
Sed0024093 Sechium edule HOM05D007939 ORTHO05D010027 9.5e-15 82.8 56 66.1
Oeu041591.1 Olea europaea HOM05D007939 ORTHO05D010027 1.2e-14 82.4 55 70.9
Gohir.A12G276700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 1.6e-14 82.0 56 66.1
Gohir.D12G277700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 1.6e-14 82.0 56 66.1
Gorai.008G298400 Gossypium raimondii HOM05D007939 ORTHO05D010027 1.6e-14 82.0 56 66.1
CsaV3_1G008140 Cucumis sativus L. HOM05D007939 ORTHO05D010027 2.1e-14 81.6 56 67.9
Sp5g14120 Schrenkiella parvula HOM05D007939 ORTHO05D010027 2.1e-14 81.6 55 69.1
Carub.0005s1396 Capsella rubella HOM05D007939 ORTHO05D010027 3.6e-14 80.9 56 66.1
Cc04_g16150 Coffea canephora HOM05D007939 ORTHO05D010027 3.6e-14 80.9 56 64.3
DCAR_021553 Daucus carota HOM05D007939 ORTHO05D010027 3.6e-14 80.9 55 67.3
AL5G27140 Arabidopsis lyrata HOM05D007939 ORTHO05D010027 4.7e-14 80.5 55 67.3
Haze_07419 Corylus avellana HOM05D007939 ORTHO05D010027 6.2e-14 80.1 45 84.4
RcHm_v2.0_Chr7g0179931 Rosa chinensis HOM05D007939 ORTHO05D010027 1.8e-13 78.6 56 67.9
Atru.chr9.2381 Acer truncatum HOM05D007939 ORTHO05D010027 2.3e-13 78.2 56 64.3
Migut.D01894 Erythranthe guttata HOM05D007939 ORTHO05D010027 3.1e-13 77.8 55 67.3
Thecc.03G001700 Theobroma cacao HOM05D007939 ORTHO05D010027 6.8e-13 76.6 47 74.5
CSS0005245 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 1.2e-12 75.9 45 75.6
Rhsim12G0160700 Rhododendron simsii HOM05D007939 ORTHO05D010027 1.2e-12 75.9 45 75.6
ClCG01G014170 Citrullus lanatus HOM05D007939 ORTHO05D010027 1.5e-12 75.5 45 77.8
MELO3C002231.2 Cucumis melo HOM05D007939 ORTHO05D010027 1.5e-12 75.5 45 77.8
Solyc06g071260.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 1.5e-12 75.5 55 65.5
EL10Ac5g10864 Beta vulgaris HOM05D007939 ORTHO05D010027 2.0e-12 75.1 45 75.6
COL.COLO4_05795 Corchorus olitorius HOM05D007939 ORTHO05D010027 2.0e-12 75.1 45 75.6
Oeu046758.2 Olea europaea HOM05D007939 ORTHO05D010027 2.6e-12 74.7 45 77.8
Sabra12G0052700 Salix brachista HOM05D007939 ORTHO05D010027 2.6e-12 74.7 45 75.6
PGSC0003DMG400033058 Solanum tuberosum HOM05D007939 ORTHO05D010027 2.6e-12 74.7 55 65.5
EL10Ac5g10844 Beta vulgaris HOM05D007939 ORTHO05D010027 3.4e-12 74.3 46 73.9
CSS0025662 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 3.4e-12 74.3 45 73.3
HanXRQChr09g0271581 Helianthus annuus HOM05D007939 ORTHO05D010027 3.4e-12 74.3 55 63.6
BcaB02g10687 Brassica carinata HOM05D007939 ORTHO05D010027 5.8e-12 73.6 45 73.3
BcaC01g01771 Brassica carinata HOM05D007939 ORTHO05D010027 5.8e-12 73.6 45 73.3
SalBow3G2524 Salvia bowleyana HOM05D007939 ORTHO05D010027 7.5e-12 73.2 50 62.0
SGA_v2.0_scaffold7G04104 Striga asiatica HOM05D007939 ORTHO05D010027 7.5e-12 73.2 43 76.7
Aa31LG4G16500 Aethionema arabicum HOM05D007939 ORTHO05D010027 9.8e-12 72.8 45 73.3
EL10Ac5g11334 Beta vulgaris HOM05D007939 ORTHO05D010027 1.3e-11 72.4 47 70.2
C03p66950 Brassica napus HOM05D007939 ORTHO05D010027 1.3e-11 72.4 45 73.3
BolC3t18968H Brassica oleracea HOM05D007939 ORTHO05D010027 1.3e-11 72.4 45 73.3
Lsat_1_v5_gn_4_74421 Lactuca sativa HOM05D007939 ORTHO05D010027 1.3e-11 72.4 55 60.0
Nitab4.5_0000642g0220 Nicotiana tabacum HOM05D007939 ORTHO05D010027 1.7e-11 72.0 48 64.6
PSO591G0029 Papaver somniferum HOM05D007939 ORTHO05D010027 1.7e-11 72.0 51 66.7
Rhsim08G0164200 Rhododendron simsii HOM05D007939 ORTHO05D010027 1.7e-11 72.0 46 69.6
Solyc03g113670.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 4.9e-11 70.5 50 58.0
CAN.G853.35 Capsicum annuum HOM05D007939 ORTHO05D010027 1.1e-10 69.3 53 52.8
Sabra15G0093500 Salix brachista HOM05D007939 ORTHO05D010027 1.1e-10 69.3 45 66.7
Nitab4.5_0002875g0050 Nicotiana tabacum HOM05D007939 ORTHO05D010027 1.4e-10 68.9 47 63.8
Peaxi162Scf00017g02235 Petunia axillaris HOM05D007939 ORTHO05D010027 2.4e-10 68.2 53 50.9
ATR0712G037 Amborella trichopoda HOM05D007939 ORTHO05D010027 3.2e-10 67.8 41 75.6
Nitab4.5_0002101g0080 Nicotiana tabacum HOM05D007939 ORTHO05D010027 5.4e-10 67.0 44 70.5
Os03g0824500 Oryza sativa ssp. japonica HOM05D007939 ORTHO05D010027 5.4e-10 67.0 48 62.5
CAN.G628.63 Capsicum annuum HOM05D007939 ORTHO05D010027 7.1e-10 66.6 45 71.1
unitig_21.g20455 Utricularia gibba HOM05D002627 ORTHO05D010027 9.2e-10 66.2 51 52.9
Nitab4.5_0000003g0340 Nicotiana tabacum HOM05D007939 ORTHO05D010027 1.2e-09 65.9 53 60.4
Zm00001eb302590 Zea mays HOM05D007939 ORTHO05D010027 3.9e-08 60.8 40 67.5
Peaxi162Scf00689g00418 Petunia axillaris HOM05D007939 ORTHO05D010027 1.9e-07 58.5 55 54.5
Zm00001eb123900 Zea mays HOM05D007939 ORTHO05D010027 1.9e-07 58.5 41 65.9
Zm00001eb151290 Zea mays HOM05D007939 ORTHO05D010027 1.9e-07 58.5 41 63.4


User provided reference genes

Program Settings