Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.0e-66 256.5 124 100.0
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.4e-60 236.1 124 93.5
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 1.3e-45 186.4 123 71.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 5.0e-45 184.5 127 71.7
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.6e-43 179.5 126 69.0
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 7.9e-43 177.2 109 75.2
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 2.5e-41 172.2 124 66.1
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 5.7e-41 171.0 124 66.1
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 5.7e-41 171.0 115 73.9
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.7e-40 169.5 126 65.9
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 2.2e-40 169.1 129 66.7
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 5.7e-33 144.4 114 63.2
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 5.7e-33 144.4 114 63.2
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 7.4e-33 144.1 128 59.4
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 8.2e-32 140.6 122 58.2
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 3.6e-27 125.2 112 55.4
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 5.7e-25 117.9 120 53.3
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.3e-24 116.7 128 48.4
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.7e-24 116.3 128 46.9
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 2.2e-24 115.9 138 51.4
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 2.8e-24 115.5 134 50.7
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.8e-24 115.5 112 52.7
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 3.7e-24 115.2 122 52.5
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 3.7e-24 115.2 130 50.8
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 4.8e-24 114.8 130 46.9
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 4.8e-24 114.8 128 52.3
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 6.3e-24 114.4 136 51.5
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 6.3e-24 114.4 136 47.1
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 8.2e-24 114.0 140 46.4
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 1.4e-23 113.2 143 44.8
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.8e-23 112.8 115 51.3
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.8e-23 112.8 128 45.3
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 3.1e-23 112.1 138 45.7
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 3.1e-23 112.1 131 45.8
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 3.1e-23 112.1 124 50.8
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 4.1e-23 111.7 140 46.4
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 4.1e-23 111.7 140 46.4
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 5.3e-23 111.3 124 51.6
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 9.1e-23 110.5 130 46.2
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 9.1e-23 110.5 135 46.7
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 1.2e-22 110.2 128 48.4
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.2e-22 110.2 128 48.4
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.6e-22 109.8 139 43.9
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.7e-22 109.0 108 52.8
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 4.5e-22 108.2 103 51.5
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 4.5e-22 108.2 133 45.1
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 4.5e-22 108.2 139 43.2
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 5.9e-22 107.8 138 42.8
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 7.7e-22 107.5 103 51.5
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 7.7e-22 107.5 121 46.3
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 7.7e-22 107.5 128 47.7
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 7.7e-22 107.5 135 46.7
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 1.0e-21 107.1 140 42.1
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.0e-21 107.1 126 49.2
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 1.3e-21 106.7 124 46.0
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.3e-21 106.7 138 42.8
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.2e-21 105.9 123 52.0
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 2.2e-21 105.9 133 45.1
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.9e-21 105.5 139 44.6
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.9e-21 105.5 141 44.7
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.9e-21 105.5 111 48.6
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 2.9e-21 105.5 113 51.3
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 2.9e-21 105.5 123 47.2
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 3.8e-21 105.1 109 47.7
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 5.0e-21 104.8 108 49.1
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 8.5e-21 104.0 131 49.6
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 8.5e-21 104.0 128 46.9
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 8.5e-21 104.0 68 70.6
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 8.5e-21 104.0 108 52.8
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 1.1e-20 103.6 131 45.0
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.5e-20 103.2 130 45.4
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.9e-20 102.8 113 46.9
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 2.5e-20 102.4 107 46.7
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.5e-20 102.4 105 53.3
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.5e-20 102.4 121 47.1
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 3.2e-20 102.1 106 50.0
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 4.2e-20 101.7 125 48.0
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.2e-20 101.7 115 50.4
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 4.2e-20 101.7 102 49.0
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 4.2e-20 101.7 126 43.7
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 7.2e-20 100.9 109 45.9
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 7.2e-20 100.9 125 44.8
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 7.2e-20 100.9 72 65.3
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.2e-19 100.1 111 45.9
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 1.6e-19 99.8 105 46.7
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 2.1e-19 99.4 107 45.8
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 2.1e-19 99.4 107 45.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.7e-19 99.0 151 39.7
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 2.7e-19 99.0 132 45.5
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 3.6e-19 98.6 105 46.7
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 3.6e-19 98.6 133 43.6
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 3.6e-19 98.6 136 42.6
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 4.7e-19 98.2 137 45.3
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 4.7e-19 98.2 132 45.5
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 8.0e-19 97.4 58 69.0
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 8.0e-19 97.4 66 66.7
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 1.8e-18 96.3 58 67.2
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 1.8e-18 96.3 58 67.2
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.8e-18 96.3 109 48.6
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 2.3e-18 95.9 119 43.7
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 3.0e-18 95.5 56 69.6
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.0e-18 95.5 108 50.0
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 5.2e-18 94.7 108 49.1
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 1.2e-17 93.6 126 44.4
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.5e-17 93.2 93 51.6
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.5e-17 93.2 121 44.6
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 2.0e-17 92.8 107 47.7
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.0e-17 92.8 108 49.1
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.3e-16 90.1 89 56.2
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.3e-16 90.1 52 71.2
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-16 90.1 51 72.5
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 2.2e-16 89.4 51 72.5
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 2.2e-16 89.4 77 54.5
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 2.2e-16 89.4 103 45.6
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 2.2e-16 89.4 92 47.8
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 3.7e-16 88.6 54 70.4
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 8.3e-16 87.4 147 38.1
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.4e-15 86.7 119 43.7
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.8e-15 86.3 80 52.5
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.8e-15 86.3 105 52.4
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 7.0e-15 84.3 74 60.8
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 2.7e-14 82.4 77 50.6
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 7.7e-14 80.9 110 50.0
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.0e-13 80.5 106 47.2
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 1.7e-13 79.7 102 42.2
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.9e-13 79.0 128 40.6
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 2.9e-13 79.0 128 40.6
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.1e-12 77.0 62 56.5
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.5e-12 76.6 52 59.6
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.9e-12 76.3 90 43.3
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 7.2e-12 74.3 52 61.5
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.2e-11 73.6 153 34.6
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 1.6e-11 73.2 49 65.3
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 2.7e-11 72.4 111 39.6
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 2.7e-11 72.4 102 42.2
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 2.7e-11 72.4 43 76.7
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 6.1e-11 71.2 91 42.9
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 6.1e-11 71.2 93 47.3
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 6.8e-10 67.8 45 62.2
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 6.8e-10 67.8 52 61.5
VMungo1215G2302 Vigna mungo HOM05D000509 ORTHO05D000466 8.8e-10 67.4 56 60.7
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 7.5e-09 64.3 71 46.5
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 9.8e-09 63.9 68 50.0
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 1.4e-07 60.1 36 72.2
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 5.9e-06 54.7 102 39.2


User provided reference genes

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