Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 0.0e+00 1338.2 706 100.0
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 0.0e+00 1199.1 707 88.7
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 0.0e+00 1184.1 709 86.3
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 0.0e+00 1183.3 709 86.5
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 0.0e+00 1181.0 710 85.8
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 0.0e+00 1180.6 709 85.6
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 0.0e+00 1170.2 709 85.6
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 0.0e+00 1164.1 708 86.4
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 0.0e+00 1142.1 712 83.4
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 0.0e+00 1076.6 792 74.9
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 9.1e-285 983.4 720 74.0
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 2.9e-283 978.4 728 73.9
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 1.9e-282 975.7 716 72.3
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 3.3e-279 964.9 724 72.7
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 5.7e-279 964.1 709 72.8
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 3.7e-278 961.4 728 72.7
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 1.1e-277 959.9 725 71.2
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 4.1e-277 958.0 714 71.4
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 2.2e-275 952.2 717 69.6
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 5.0e-275 951.0 714 71.4
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 1.3e-270 936.4 717 71.0
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 8.2e-270 933.7 724 71.5
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 1.8e-269 932.6 717 68.8
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 2.0e-268 929.1 714 68.6
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 6.5e-267 924.1 714 69.3
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 2.5e-266 922.2 722 71.7
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 7.2e-266 920.6 588 83.0
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 2.7e-265 918.7 718 68.7
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 4.7e-265 917.9 710 70.4
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 3.4e-263 911.8 720 69.0
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 2.2e-262 909.1 727 69.6
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 3.7e-262 908.3 709 67.4
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 1.1e-261 906.7 716 70.5
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.4e-261 906.4 716 70.1
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.4e-261 906.4 716 70.4
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 1.8e-261 906.0 719 69.7
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.4e-261 905.6 716 70.4
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 5.3e-261 904.4 732 68.0
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 2.0e-260 902.5 717 67.6
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 2.7e-260 902.1 708 67.8
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.7e-260 902.1 716 69.8
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.3e-259 899.8 713 68.3
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 8.5e-259 897.1 711 69.3
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 4.2e-258 894.8 715 68.8
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 9.8e-255 883.6 703 67.4
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 3.7e-254 881.7 703 67.0
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.4e-253 879.0 703 67.0
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 5.4e-253 877.9 721 66.3
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 1.3e-251 873.2 720 66.8
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 8.6e-251 870.5 719 66.3
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.5e-250 869.8 713 67.2
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.4e-248 863.2 713 67.3
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 6.8e-248 860.9 703 66.0
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 3.2e-245 852.0 633 71.7
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 1.7e-243 846.3 700 65.1
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 3.9e-243 845.1 715 65.5
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 5.0e-243 844.7 733 64.5
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 9.5e-242 840.5 936 54.4
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 1.5e-239 833.2 529 81.3
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 2.6e-239 832.4 711 65.0
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 5.8e-239 831.2 721 64.8
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 9.8e-239 830.5 723 64.6
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 2.7e-236 822.4 725 63.9
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 7.8e-236 820.8 718 61.8
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 5.0e-235 818.1 712 63.3
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 5.0e-235 818.1 718 64.2
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 8.0e-233 810.8 722 62.5
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 4.0e-232 808.5 714 64.1
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 8.9e-232 807.4 712 63.8
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 4.4e-231 805.1 593 71.8
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 9.8e-231 803.9 718 63.8
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 1.1e-229 800.4 720 61.0
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 1.6e-228 796.6 699 63.1
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 4.6e-228 795.0 710 61.7
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 6.0e-228 794.7 720 60.8
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 5.1e-227 791.6 922 51.7
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 5.6e-226 788.1 740 60.3
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 9.5e-226 787.3 706 63.5
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 9.5e-226 787.3 716 61.7
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 2.3e-224 782.7 715 58.9
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 1.9e-221 773.1 721 61.7
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 2.4e-221 772.7 724 60.8
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 4.1e-221 771.9 759 57.2
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 5.1e-219 765.0 718 59.6
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 5.1e-219 765.0 711 58.1
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 9.6e-218 760.8 714 59.1
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 7.6e-215 751.1 711 57.8
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 4.9e-214 748.4 711 57.8
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 6.4e-214 748.0 718 59.3
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 8.4e-214 747.7 711 57.5
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 4.6e-212 741.9 712 57.6
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 5.6e-210 734.9 711 57.5
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 5.6e-210 734.9 735 55.6
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 9.0e-208 727.6 708 59.6
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 5.1e-203 711.8 547 70.0
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 6.6e-203 711.4 735 57.3
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 1.3e-201 707.2 731 56.6
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 3.4e-199 699.1 729 56.1
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 8.7e-195 684.5 571 66.7
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 2.1e-193 679.9 618 60.7
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 3.1e-192 676.0 704 56.0
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 7.6e-191 671.4 613 60.7
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 1.7e-169 600.5 590 60.3
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 2.6e-167 593.2 586 56.1
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 5.3e-152 542.3 507 60.0
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 4.1e-136 489.6 765 41.3
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 2.9e-129 466.8 785 39.6
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 6.0e-119 432.6 461 56.4
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 5.8e-114 416.0 707 38.0
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 1.3e-97 361.7 293 64.8
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 2.4e-96 357.5 267 67.0
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 6.0e-87 326.2 448 48.4
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 8.7e-78 295.8 442 43.9
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 5.7e-69 266.5 304 54.6
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 6.9e-59 233.0 370 44.6
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 2.5e-56 224.6 182 66.5
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 1.8e-54 218.4 186 61.3
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 6.9e-51 206.5 151 81.5
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 3.4e-50 204.1 282 47.2
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 9.1e-43 179.5 156 57.7
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 2.6e-42 177.9 124 83.1
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 1.4e-38 165.6 107 83.2
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 3.3e-37 161.0 144 61.1
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 1.3e-36 159.1 97 83.5
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 2.4e-35 154.8 131 71.0
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 1.3e-33 149.1 124 66.9
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 2.7e-23 114.8 151 46.4
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 1.8e-19 102.1 119 46.2
CAN.G363.39 Capsicum annuum HOM05D005929 ORTHO05D007869 2.8e-07 61.6 128 33.6
MBI16_g22817_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 6.8e-06 57.0 35 80.0


User provided reference genes

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