Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 1.8e-34 148.7 74 100.0
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 8.4e-16 86.7 56 82.1
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.1e-15 86.3 56 80.4
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.6e-14 82.4 56 78.6
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 7.9e-14 80.1 56 75.0
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.0e-13 79.7 58 74.1
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.3e-13 79.3 56 71.4
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.3e-13 79.3 68 63.2
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 1.8e-13 79.0 56 69.6
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.8e-13 79.0 56 71.4
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.8e-13 79.0 57 71.9
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 3.9e-13 77.8 56 71.4
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.9e-13 77.8 56 73.2
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 3.9e-13 77.8 56 73.2
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 8.7e-13 76.6 56 71.4
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.1e-12 76.3 56 69.6
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.1e-12 76.3 57 70.2
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 1.1e-12 76.3 56 71.4
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 1.5e-12 75.9 56 69.6
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 1.5e-12 75.9 57 64.9
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.5e-12 75.1 55 65.5
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 3.3e-12 74.7 57 66.7
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 3.3e-12 74.7 56 67.9
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 4.3e-12 74.3 50 68.0
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 7.4e-12 73.6 58 69.0
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 7.4e-12 73.6 58 69.0
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.3e-11 72.8 56 66.1
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 1.3e-11 72.8 57 64.9
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 1.6e-11 72.4 70 60.0
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 1.6e-11 72.4 70 60.0
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.8e-11 71.6 58 67.2
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.7e-11 71.2 58 67.2
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 4.8e-11 70.9 56 69.6
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 4.8e-11 70.9 57 71.9
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 4.8e-11 70.9 57 71.9
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 8.1e-11 70.1 56 66.1
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.1e-10 69.7 55 65.5
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-10 69.3 57 68.4
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-10 69.3 57 70.2
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.4e-10 69.3 56 62.5
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.4e-10 69.3 57 66.7
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.4e-10 69.3 56 66.1
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.8e-10 68.9 57 59.6
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.8e-10 68.9 59 69.5
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.8e-10 68.9 57 63.2
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 2.4e-10 68.6 58 67.2
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 3.1e-10 68.2 56 60.7
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 3.1e-10 68.2 57 68.4
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 3.1e-10 68.2 55 67.3
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 4.0e-10 67.8 59 66.1
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 4.0e-10 67.8 50 68.0
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 5.3e-10 67.4 50 62.0
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 6.9e-10 67.0 51 64.7
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 6.9e-10 67.0 43 72.1
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 6.9e-10 67.0 57 61.4
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.2e-09 66.2 57 59.6
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 1.5e-09 65.9 56 64.3
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.0e-09 65.5 54 63.0
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 2.6e-09 65.1 50 64.0
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 3.4e-09 64.7 57 63.2
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 4.5e-09 64.3 57 61.4
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 4.5e-09 64.3 50 56.0
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 7.6e-09 63.5 56 58.9
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.0e-08 63.2 46 60.9
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-08 62.8 49 65.3
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.3e-08 62.8 52 57.7
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.7e-08 62.4 57 57.9
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-08 62.0 49 65.3
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-08 62.0 49 65.3
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-08 62.0 49 65.3
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-08 62.0 49 65.3
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.2e-08 62.0 49 65.3
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 2.9e-08 61.6 49 65.3
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 3.8e-08 61.2 48 58.3
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 3.8e-08 61.2 49 63.3
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 8.4e-08 60.1 49 59.2
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 8.4e-08 60.1 48 60.4
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 8.4e-08 60.1 49 61.2
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 8.4e-08 60.1 49 61.2
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 8.4e-08 60.1 50 60.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-07 59.7 65 49.2
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.1e-07 59.7 48 62.5
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 1.1e-07 59.7 58 56.9
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-07 59.3 48 58.3
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.4e-07 59.3 65 50.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.4e-07 59.3 63 55.6
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.5e-07 58.5 61 59.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.5e-07 58.5 62 58.1
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.5e-07 58.5 58 55.2
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 4.2e-07 57.8 48 62.5
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 9.3e-07 56.6 53 54.7
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 9.3e-07 56.6 65 46.2
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.2e-06 56.2 64 45.3
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.2e-06 56.2 48 60.4
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 1.2e-06 56.2 62 61.3
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.6e-06 55.8 61 47.5
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-06 55.8 64 43.8
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-06 55.8 64 43.8
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-06 55.8 64 43.8
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.6e-06 55.8 64 43.8
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.6e-06 55.8 64 43.8
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-06 55.8 59 50.8
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.6e-06 55.8 59 50.8
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.6e-06 55.8 57 54.4
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 1.6e-06 55.8 57 54.4
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.1e-06 55.5 53 49.1
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.1e-06 55.5 56 50.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.7e-06 55.1 56 50.0
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.7e-06 55.1 75 45.3
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 2.7e-06 55.1 61 54.1
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 3.5e-06 54.7 45 62.2
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 3.5e-06 54.7 49 51.0
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 3.5e-06 54.7 58 53.4
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 4.6e-06 54.3 59 47.5
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 4.6e-06 54.3 59 54.2
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 4.6e-06 54.3 59 50.8
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 4.6e-06 54.3 59 50.8
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 6.0e-06 53.9 45 60.0
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 6.0e-06 53.9 57 52.6


User provided reference genes

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