Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 1.5e-68 262.7 126 100.0
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 88.9
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.3e-58 228.8 126 85.7
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 2.3e-58 228.8 125 85.6
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 86.5
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 85.7
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 2.6e-57 225.3 126 84.9
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 3.4e-57 224.9 126 84.9
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 82.5
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 9.8e-57 223.4 126 83.3
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 9.8e-57 223.4 126 84.1
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 1.3e-56 223.0 126 84.1
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.7e-56 222.6 126 82.5
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 2.9e-56 221.9 126 81.7
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 2.9e-56 221.9 125 81.6
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 3.7e-56 221.5 126 82.5
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 4.9e-56 221.1 126 83.3
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 6.4e-56 220.7 126 83.3
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 6.4e-56 220.7 126 82.5
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 80.2
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 81.7
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 83.3
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.1e-55 219.9 125 83.2
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.1e-55 219.9 125 83.2
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 81.7
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 1.4e-55 219.5 126 81.0
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.8e-55 219.2 125 82.4
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.8e-55 219.2 126 81.0
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 83.3
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 82.5
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.4e-55 218.8 126 81.7
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 2.4e-55 218.8 125 82.4
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 3.2e-55 218.4 121 85.1
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 3.2e-55 218.4 126 81.0
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 3.2e-55 218.4 126 81.0
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 3.2e-55 218.4 126 81.7
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 83.3
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 5.4e-55 217.6 126 82.5
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 80.2
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 81.7
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 7.0e-55 217.2 127 82.7
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 9.2e-55 216.9 126 81.7
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 9.2e-55 216.9 127 81.9
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.2e-54 216.5 125 80.0
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 81.7
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 80.2
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 79.4
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 79.4
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 79.4
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 80.2
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.0e-54 215.7 125 80.0
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.0e-54 215.7 121 82.6
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.0e-54 215.7 126 79.4
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.7e-54 215.3 126 81.0
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.5e-54 214.9 127 81.1
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 5.9e-54 214.2 121 82.6
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.9e-54 214.2 126 77.8
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 7.8e-54 213.8 126 81.0
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 1.0e-53 213.4 126 81.0
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 78.6
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 80.2
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 1.7e-53 212.6 126 81.7
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 1.7e-53 212.6 126 81.7
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 2.9e-53 211.8 125 77.6
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 6.6e-53 210.7 140 73.6
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 1.5e-52 209.5 126 80.2
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.5e-52 209.5 126 78.6
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 1.9e-52 209.1 126 78.6
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 2.5e-52 208.8 126 78.6
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 3.3e-52 208.4 126 78.6
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 4.3e-52 208.0 127 80.3
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.6e-51 206.1 126 77.8
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 2.1e-51 205.7 126 76.2
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 2.1e-51 205.7 126 76.2
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 2.1e-51 205.7 126 76.2
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 4.7e-51 204.5 126 75.4
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 4.7e-51 204.5 126 77.0
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 4.7e-51 204.5 126 75.4
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 4.7e-51 204.5 126 76.2
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 6.2e-51 204.1 126 76.2
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 6.2e-51 204.1 126 75.4
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 1.0e-50 203.4 126 75.4
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 1.4e-50 203.0 126 76.2
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 1.4e-50 203.0 126 76.2
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 1.4e-50 203.0 126 76.2
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 1.4e-50 203.0 126 76.2
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.8e-50 202.6 126 75.4
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.8e-50 202.6 126 76.2
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 2.3e-50 202.2 126 75.4
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 2.3e-50 202.2 126 75.4
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 2.3e-50 202.2 126 75.4
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 3.1e-50 201.8 126 76.2
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 3.1e-50 201.8 126 77.8
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 5.2e-50 201.1 126 77.8
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 8.9e-50 200.3 126 73.8
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 8.9e-50 200.3 126 75.4
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 8.9e-50 200.3 126 75.4
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 8.9e-50 200.3 126 75.4
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 5.8e-49 197.6 107 87.9
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 7.5e-49 197.2 126 77.0
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 1.7e-48 196.1 107 86.0
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.9e-48 195.3 126 73.0
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 6.4e-48 194.1 127 74.0
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 6.4e-48 194.1 107 86.9
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 8.3e-48 193.7 112 80.4
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 3.2e-47 191.8 114 78.1
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 3.2e-47 191.8 107 85.0
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 3.2e-47 191.8 107 84.1
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 4.1e-47 191.4 107 85.0
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 7.0e-47 190.7 107 84.1
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 9.2e-47 190.3 107 85.0
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 2.7e-46 188.7 107 86.0
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 3.5e-46 188.3 121 73.6
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 4.6e-46 188.0 126 68.3
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 1.0e-45 186.8 126 70.6
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.7e-45 186.0 107 81.3
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.5e-44 183.0 107 79.4
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 4.3e-44 181.4 126 69.8
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 1.6e-43 179.5 104 82.7
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.1e-43 179.1 139 66.2
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 4.7e-43 177.9 112 76.8
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 6.2e-43 177.6 126 65.9
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.8e-42 176.0 107 79.4
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 2.3e-42 175.6 112 75.9
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 2.3e-42 175.6 112 75.9
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 1.2e-41 173.3 93 82.8
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 5.8e-41 171.0 94 81.9
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 3.7e-40 168.3 94 79.8
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 1.6e-35 152.9 124 62.9
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 1.4e-34 149.8 121 58.7
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 2.3e-34 149.1 141 56.0
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 1.2e-33 146.7 75 86.7
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 2.6e-33 145.6 126 60.3
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 2.1e-30 136.0 119 52.9
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 7.8e-30 134.0 126 57.1
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.9e-28 129.4 79 79.7
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 2.1e-27 125.9 79 73.4
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 8.1e-27 124.0 75 80.0
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.9e-24 115.5 87 66.7
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 3.8e-24 115.2 125 46.4
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 6.4e-24 114.4 64 79.7
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 3.2e-23 112.1 108 49.1
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 5.4e-23 111.3 87 63.2
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 9.3e-23 110.5 89 67.4
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 3.5e-22 108.6 64 75.0
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 4.6e-22 108.2 126 48.4
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 7.8e-22 107.5 94 60.6
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 2.3e-21 105.9 75 66.7
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 9.6e-20 100.5 97 54.6
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 5.8e-17 91.3 63 71.4
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.3e-16 90.1 72 65.3
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 5.4e-15 84.7 79 50.6
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.3e-13 80.1 103 41.7
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.5e-12 76.6 43 81.4
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.9e-07 59.7 45 68.9
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 3.2e-07 58.9 42 71.4


User provided reference genes

Program Settings