Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.7e-199 699.1 362 100.0
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 5.5e-169 597.8 366 85.5
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 4.6e-168 594.7 363 85.4
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 7.9e-168 594.0 388 81.2
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.4e-167 593.2 362 84.3
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 4.8e-165 584.7 362 85.1
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 8.2e-165 583.9 342 86.8
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 1.2e-163 580.1 363 83.2
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.4e-163 578.6 337 86.6
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.6e-160 569.7 361 82.5
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-156 557.0 356 79.8
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.1e-156 557.0 348 81.0
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 1.8e-156 556.2 365 78.1
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.2e-155 553.5 362 78.2
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-155 553.5 356 79.2
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 3.5e-155 552.0 362 77.9
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-154 550.1 357 79.0
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-153 545.4 357 77.9
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 5.5e-153 544.7 341 80.4
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-152 543.5 328 82.9
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.6e-152 543.1 337 81.3
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 2.7e-152 542.3 346 80.1
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 1.8e-151 539.7 353 79.6
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.0e-151 538.5 351 75.8
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 4.0e-151 538.5 351 75.8
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 6.7e-151 537.7 384 73.7
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 6.7e-151 537.7 357 75.6
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 1.5e-150 536.6 321 82.9
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 2.0e-150 536.2 355 75.5
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 2.0e-150 536.2 359 76.0
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 2.6e-150 535.8 352 76.7
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 5.7e-150 534.6 352 77.0
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 9.7e-150 533.9 338 80.2
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 9.7e-150 533.9 334 80.2
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 9.7e-150 533.9 352 77.6
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 1.3e-149 533.5 330 80.6
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.2e-149 532.7 345 78.6
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 2.2e-149 532.7 339 79.9
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.8e-148 529.6 352 76.1
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 2.4e-148 529.3 310 84.2
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.1e-148 528.9 352 76.1
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 9.1e-148 527.3 350 76.6
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.6e-147 526.6 354 76.3
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 7.7e-147 524.2 357 73.9
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 7.7e-147 524.2 339 76.7
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.0e-146 523.9 335 78.5
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 1.3e-146 523.5 363 73.3
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.5e-145 519.2 362 72.7
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.5e-145 519.2 362 72.7
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.5e-145 519.2 362 72.7
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 3.2e-145 518.8 363 73.3
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 4.2e-145 518.5 363 73.3
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.2e-145 518.5 330 78.8
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.2e-145 518.5 330 78.8
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 4.2e-145 518.5 358 73.7
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 7.2e-145 517.7 347 75.2
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 7.2e-145 517.7 347 75.2
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 7.2e-145 517.7 347 75.2
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 9.4e-145 517.3 353 73.7
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 1.6e-144 516.5 366 72.1
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 1.6e-144 516.5 351 74.1
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 2.1e-144 516.2 353 74.8
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 3.6e-144 515.4 334 76.0
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 3.6e-144 515.4 354 74.6
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 3.6e-144 515.4 350 75.1
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 4.7e-144 515.0 328 78.4
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 8.0e-144 514.2 353 74.2
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 8.0e-144 514.2 359 73.0
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.0e-143 513.8 363 73.3
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 2.3e-143 512.7 315 80.0
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 3.0e-143 512.3 339 77.0
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 4.0e-143 511.9 332 75.9
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 5.2e-143 511.5 351 72.6
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 6.8e-143 511.1 363 71.3
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.2e-142 510.4 356 73.9
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 2.0e-142 509.6 299 81.3
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.6e-142 509.2 332 77.1
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.6e-142 509.2 315 82.2
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.6e-142 509.2 313 79.9
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 5.7e-142 508.1 348 74.7
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 7.5e-142 507.7 347 73.2
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 9.8e-142 507.3 348 72.4
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 2.4e-140 502.7 332 74.4
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 3.1e-140 502.3 288 85.4
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.6e-139 500.0 352 72.4
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.6e-139 500.0 299 86.6
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 2.0e-139 499.6 357 72.0
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.5e-138 494.2 349 73.4
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.1e-137 493.8 313 75.7
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.5e-137 493.4 330 74.2
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 7.2e-137 491.1 279 89.6
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 2.8e-136 489.2 308 76.6
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 8.0e-136 487.6 349 72.5
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.0e-135 487.3 329 73.9
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 5.2e-135 485.0 353 70.3
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 8.8e-135 484.2 334 75.4
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 1.2e-134 483.8 300 78.3
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.5e-134 483.4 331 74.6
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 3.4e-134 482.3 348 71.3
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 5.7e-134 481.5 323 75.9
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 8.3e-133 477.6 304 76.6
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.1e-132 475.3 341 72.1
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.2e-131 473.8 318 75.5
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 3.5e-131 472.2 332 70.5
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 5.9e-131 471.5 328 72.9
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 7.8e-131 471.1 362 69.9
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.6e-130 468.0 378 65.6
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 8.6e-130 467.6 344 69.2
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.1e-129 467.2 309 76.1
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 8.0e-128 461.1 320 71.2
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.5e-126 456.8 333 67.6
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 1.1e-124 450.7 369 65.3
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.4e-124 450.3 302 73.5
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 1.8e-124 449.9 342 66.1
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.8e-124 449.9 298 77.9
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.1e-121 440.7 353 66.9
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 4.7e-120 435.3 398 59.3
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.3e-119 433.0 311 72.7
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 6.8e-119 431.4 256 83.6
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 1.2e-118 430.6 300 70.7
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.4e-111 407.1 360 59.2
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 1.4e-111 407.1 360 59.2
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 4.9e-109 398.7 291 68.7
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 2.1e-107 393.3 341 61.3
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.7e-107 392.9 241 81.3
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 4.6e-107 392.1 352 59.7
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 8.6e-106 387.9 235 81.3
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.1e-105 387.5 307 66.1
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 4.3e-105 385.6 246 76.8
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 9.5e-105 384.4 314 61.8
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 2.9e-93 346.3 229 76.0
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 3.3e-89 332.8 223 75.8
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 3.1e-87 326.2 213 72.8
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.7e-85 320.5 233 70.8
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.4e-84 316.6 349 52.1
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.4e-78 296.2 197 77.2
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.5e-73 280.0 259 60.2
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 6.7e-66 255.4 177 73.4
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.9e-60 237.3 164 73.8
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.9e-60 237.3 170 69.4
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.1e-39 166.4 133 60.2
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.2e-37 160.6 117 65.0
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 8.5e-37 158.7 124 61.3
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.1e-35 154.1 126 64.3
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 2.3e-34 150.6 117 72.6
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 6.3e-32 142.5 83 79.5
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.9e-30 136.0 98 67.3
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.3e-29 134.8 124 58.1
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.5e-28 131.3 319 31.3
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.9e-28 131.0 128 57.8
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 2.5e-28 130.6 138 54.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 8.3e-24 115.5 88 67.0
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 1.2e-22 111.7 79 81.0
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 4.5e-22 109.8 88 62.5
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.1e-20 105.1 83 57.8
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-18 97.4 68 66.2
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 4.0e-18 96.7 55 76.4
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 4.9e-16 89.7 73 69.9
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 2.5e-12 77.4 43 74.4


User provided reference genes

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