Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 2.1e-266 921.8 457 100.0
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 1.8e-172 609.8 466 70.2
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 3.7e-162 575.5 472 65.5
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 2.4e-161 572.8 473 65.8
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 6.5e-159 564.7 470 65.5
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 1.1e-158 563.9 469 64.8
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.0e-155 553.1 466 63.5
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.5e-150 536.2 470 60.6
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.5e-150 536.2 470 60.6
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 5.2e-148 528.5 471 59.7
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 3.3e-147 525.8 466 62.9
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 2.2e-146 523.1 466 60.7
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 8.2e-146 521.2 471 61.6
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.1e-133 479.9 469 55.0
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 3.6e-133 479.2 469 55.0
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 2.2e-130 469.9 464 55.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.2e-130 469.9 471 54.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.1e-129 467.6 466 52.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.9e-128 461.8 466 52.6
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.8e-128 461.5 467 52.9
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 1.3e-127 460.7 461 53.1
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-127 460.7 467 52.5
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 2.9e-127 459.5 465 51.8
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 2.9e-127 459.5 469 52.5
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.9e-127 459.5 467 52.5
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 2.9e-127 459.5 467 52.7
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.8e-127 459.1 466 52.6
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 5.0e-127 458.8 466 52.6
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 6.6e-127 458.4 467 52.5
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.6e-127 458.4 467 52.2
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 3.3e-126 456.1 459 53.4
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 4.3e-126 455.7 467 52.2
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.6e-126 455.3 460 53.0
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 3.6e-125 452.6 469 51.4
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.1e-125 451.8 460 52.8
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 4.0e-124 449.1 469 51.8
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 5.2e-124 448.7 469 50.7
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 1.2e-123 447.6 460 52.8
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 3.4e-123 446.0 467 51.6
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 3.4e-123 446.0 466 51.7
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.7e-122 443.7 466 51.3
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 3.7e-122 442.6 467 51.6
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.4e-121 440.7 465 51.6
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 3.5e-120 436.0 466 50.9
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 4.6e-120 435.6 470 50.9
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 1.3e-119 434.1 469 51.0
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 3.0e-119 433.0 467 52.2
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 3.0e-119 433.0 467 51.4
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 2.1e-117 426.8 468 48.5
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 4.7e-117 425.6 469 49.9
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 6.8e-116 421.8 466 49.6
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 1.5e-115 420.6 472 49.4
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.6e-115 419.9 467 49.0
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.6e-115 419.9 469 49.0
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 2.6e-115 419.9 356 59.0
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.7e-114 417.2 468 50.4
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 8.3e-114 414.8 467 47.5
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.4e-113 414.1 463 49.7
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 7.0e-113 411.8 465 49.0
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 9.2e-113 411.4 466 46.1
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 9.2e-113 411.4 466 47.4
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 6.0e-112 408.7 469 48.6
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 1.0e-111 407.9 467 48.4
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 1.7e-111 407.1 466 48.7
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 3.9e-111 406.0 469 48.8
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.9e-111 406.0 469 48.4
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 6.6e-111 405.2 472 46.8
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 1.9e-110 403.7 463 48.6
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.9e-110 403.7 473 48.0
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 3.3e-110 402.9 468 47.9
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.1e-109 400.2 469 47.8
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 3.6e-109 399.4 453 47.5
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 8.1e-109 398.3 402 51.7
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 1.1e-108 397.9 460 47.2
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.3e-108 396.7 468 48.1
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 2.3e-108 396.7 472 46.4
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 5.2e-108 395.6 452 47.6
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 5.2e-108 395.6 459 48.4
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 2.0e-107 393.7 462 45.7
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 2.0e-107 393.7 355 56.6
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 5.8e-107 392.1 467 45.8
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 9.9e-107 391.3 469 47.3
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 9.9e-107 391.3 472 46.6
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 2.2e-106 390.2 471 48.2
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 2.2e-106 390.2 470 46.2
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 2.2e-106 390.2 466 47.6
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 3.7e-106 389.4 470 46.2
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.9e-106 389.0 470 46.4
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.1e-105 387.9 470 46.4
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.1e-105 386.0 468 46.6
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 4.1e-105 386.0 463 46.2
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 5.4e-105 385.6 467 45.8
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 7.1e-105 385.2 470 45.3
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 1.9e-102 377.1 365 52.9
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.9e-102 377.1 467 44.1
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 5.6e-102 375.6 474 44.1
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.1e-101 373.6 466 43.8
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 2.1e-101 373.6 509 42.4
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 3.6e-101 372.9 466 45.5
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.1e-100 371.3 464 44.2
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.2e-98 363.6 466 45.5
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 3.8e-98 362.8 465 43.7
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.6e-96 357.5 353 52.7
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.1e-96 357.1 466 43.6
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 2.3e-95 353.6 274 67.2
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 5.6e-94 349.0 274 66.4
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 6.2e-93 345.5 432 45.8
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 3.1e-92 343.2 469 42.9
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 4.0e-92 342.8 274 66.4
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.0e-92 342.8 466 43.3
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 9.0e-92 341.7 247 70.4
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.2e-91 341.3 465 43.2
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 3.2e-89 333.2 290 64.8
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.1e-88 330.5 460 42.2
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 6.2e-85 318.9 513 38.6
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 6.9e-84 315.5 406 45.1
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 7.1e-81 305.4 450 41.1
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 1.3e-77 294.7 311 51.8
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 2.9e-74 283.5 394 41.4
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 3.8e-74 283.1 453 38.6
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-71 274.2 448 37.5
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.3e-71 273.9 354 42.9
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 1.2e-67 261.5 474 34.4
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 5.8e-67 259.2 356 42.7
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 7.6e-67 258.8 287 45.6
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 2.9e-66 256.9 225 62.2
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.3e-62 243.0 457 35.2
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 3.7e-61 240.0 396 37.9
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.2e-56 224.9 404 34.7
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-53 214.9 146 71.9
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 2.2e-53 214.2 466 32.4
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.4e-52 210.7 337 37.1
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 9.1e-52 208.8 310 41.3
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 1.5e-51 208.0 521 29.2
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.1e-49 201.8 359 36.2
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 4.2e-49 199.9 168 61.3
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 7.9e-48 195.7 450 31.8
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-47 194.5 163 60.1
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-47 194.1 472 30.9
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 8.8e-47 192.2 457 31.1
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 2.6e-46 190.7 444 34.9
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 2.6e-46 190.7 197 57.9
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 7.0e-44 182.6 239 44.4
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 4.5e-43 179.9 310 38.7
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.1e-41 175.3 386 32.1
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 3.6e-40 170.2 344 31.4
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 8.0e-40 169.1 454 29.7
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 3.0e-39 167.2 253 39.5
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.3e-38 163.7 237 39.2
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.2e-37 161.0 257 39.7
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.2e-37 161.0 160 53.1
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 5.3e-36 156.4 391 30.9
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 4.5e-35 153.3 259 35.5
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 6.5e-34 149.4 123 61.8
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 4.7e-32 143.3 149 58.4
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.6e-30 137.5 96 68.8
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 2.2e-26 124.4 142 49.3
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.7e-24 116.7 116 55.2
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 1.0e-23 115.5 190 35.8
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 6.8e-23 112.8 73 69.9
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 1.2e-22 112.1 135 47.4
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 2.0e-19 101.3 309 32.7
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 8.6e-18 95.9 139 39.6
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 3.3e-17 94.0 138 39.1
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.6e-16 91.7 79 55.7
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 8.0e-16 89.4 448 24.8
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 9.8e-14 82.4 109 41.3
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 8.6e-10 69.3 90 38.9


User provided reference genes

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