Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0006068 Lotus japonicus HOM05D003010 ORTHO05D010439 1.4e-44 182.6 93 100.0
Lj4g0025656 Lotus japonicus HOM05D003010 ORTHO05D010439 1.4e-44 182.6 93 100.0
Prupe.7G238200 Prunus persica HOM05D009305 ORTHO05D010439 6.0e-19 97.4 92 57.6
RcHm_v2.0_Chr2g0089271 Rosa chinensis HOM05D009305 ORTHO05D010439 4.7e-16 87.8 91 51.6
FAN26G0439 Fragaria x ananassa HOM05D009305 ORTHO05D010439 2.4e-15 85.5 91 50.5
Lalb_Chr13g0302051 Lupinus albus HOM05D009305 ORTHO05D010439 4.4e-14 81.3 92 55.4
Glyma.17G117900 Glycine max HOM05D003010 ORTHO05D010439 5.8e-14 80.9 91 52.7
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 3.8e-13 78.2 93 49.5
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 4.9e-13 77.8 92 47.8
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 7.1e-12 73.9 93 47.3
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 7.1e-12 73.9 93 47.3
FAN19G2542 Fragaria x ananassa HOM05D009305 ORTHO05D010439 9.3e-12 73.6 89 49.4
Ciclev10010147m.g Citrus clementina HOM05D003010 ORTHO05D010439 1.2e-11 73.2 96 43.8
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 1.2e-11 73.2 91 49.5
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 1.6e-11 72.8 88 50.0
Phvul.003G161400 Phaseolus vulgaris HOM05D009305 ORTHO05D010439 3.5e-11 71.6 89 49.4
Potri.008G015800 Populus trichocarpa HOM05D003010 ORTHO05D010439 6.0e-11 70.9 90 50.0
CiPaw.04G169500 Carya illinoinensis HOM05D009305 ORTHO05D010439 1.0e-10 70.1 88 48.9
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 1.0e-10 70.1 92 51.1
Atru.chr7.1234 Acer truncatum HOM05D009305 ORTHO05D010439 1.3e-10 69.7 93 48.4
COL.COLO4_35181 Corchorus olitorius HOM05D018231 ORTHO05D010439 1.7e-10 69.3 98 37.8
Potri.008G015100 Populus trichocarpa HOM05D003010 ORTHO05D010439 2.3e-10 68.9 90 48.9
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 3.0e-10 68.6 99 41.4
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 3.0e-10 68.6 94 48.9
arahy.Tifrunner.gnm1.ann1.0EDZ2A Arachis hypogaea HOM05D009305 ORTHO05D010439 3.9e-10 68.2 97 42.3
Solyc05g052080.1 Solanum lycopersicum HOM05D003010 ORTHO05D003623 8.7e-10 67.0 97 44.3
Eucgr.C01116 Eucalyptus grandis HOM05D009305 ORTHO05D010439 1.5e-09 66.2 89 46.1
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 3.3e-09 65.1 95 43.2
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 5.6e-09 64.3 90 43.3
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 5.6e-09 64.3 95 43.2
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 7.3e-09 63.9 92 42.4
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 7.3e-09 63.9 90 46.7
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 9.6e-09 63.5 90 43.3
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 9.6e-09 63.5 90 38.9
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 1.3e-08 63.2 92 43.5
Manes.11G101800 Manihot esculenta HOM05D009305 ORTHO05D010439 1.3e-08 63.2 88 44.3
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.6e-08 62.8 90 41.1
Thecc.09G121000 Theobroma cacao HOM05D029830 ORTHO05D010439 1.6e-08 62.8 93 46.2
CsaV3_1G029730 Cucumis sativus L. HOM05D003010 ORTHO05D010439 2.8e-08 62.0 88 48.9
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 2.8e-08 62.0 92 41.3
Sc18g0000820 Simmondsia chinensis HOM05D003010 ORTHO05D010439 3.6e-08 61.6 91 42.9
Lj1A974G32 Lonicera japonica HOM05D003010 ORTHO05D003623 4.8e-08 61.2 97 43.3
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 6.2e-08 60.8 90 40.0
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 6.2e-08 60.8 91 38.5
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 6.2e-08 60.8 92 41.3
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 8.1e-08 60.5 91 39.6
HanXRQChr08g0229131 Helianthus annuus HOM05D003010 ORTHO05D003623 8.1e-08 60.5 90 45.6
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 8.1e-08 60.5 92 39.1
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 1.1e-07 60.1 96 40.6
Sed0015404 Sechium edule HOM05D009305 ORTHO05D010439 1.1e-07 60.1 88 50.0
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 1.4e-07 59.7 90 43.3
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 1.8e-07 59.3 90 37.8
ECA234G2671 Erigeron canadensis HOM05D003010 ORTHO05D010439 2.4e-07 58.9 91 46.2
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 4.0e-07 58.2 92 40.2
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 4.0e-07 58.2 94 41.5
EL10Ac8g18592 Beta vulgaris HOM05D003010 ORTHO05D003623 5.3e-07 57.8 90 37.8
HanXRQChr14g0461131 Helianthus annuus HOM05D003010 ORTHO05D003623 5.3e-07 57.8 93 43.0
Cc06_g08930 Coffea canephora HOM05D018231 ORTHO05D010439 6.9e-07 57.4 90 44.4
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 6.9e-07 57.4 91 41.8
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 6.9e-07 57.4 94 44.7
Gohir.A08G239500 Gossypium hirsutum HOM05D029830 ORTHO05D010439 9.0e-07 57.0 95 38.9
Rhsim01G0078400 Rhododendron simsii HOM05D003010 ORTHO05D010439 1.2e-06 56.6 92 44.6
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 1.2e-06 56.6 92 42.4
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 1.2e-06 56.6 90 41.1
CSS0003493 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.5e-06 56.2 94 40.4
Gorai.004G278100 Gossypium raimondii HOM05D029830 ORTHO05D010439 1.5e-06 56.2 95 37.9
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.5e-06 56.2 91 40.7
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 1.5e-06 56.2 91 38.5
CSS0005375 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 2.0e-06 55.8 95 40.0
CSS0010853 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 2.0e-06 55.8 95 40.0
CSS0012144 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 2.0e-06 55.8 95 40.0
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 2.0e-06 55.8 90 40.0
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 2.0e-06 55.8 91 38.5
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 2.0e-06 55.8 90 37.8
CANSAT56G3417 Cannabis sativa HOM05D003010 ORTHO05D003623 2.6e-06 55.5 88 40.9
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 2.6e-06 55.5 90 44.4
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 3.4e-06 55.1 90 38.9
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 3.4e-06 55.1 90 41.1
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 3.4e-06 55.1 90 37.8
Lj5g0011838 Lotus japonicus HOM05D003010 ORTHO05D003623 3.4e-06 55.1 92 42.4
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 3.4e-06 55.1 90 38.9
Ah.07g199010 Amaranthus hybridus HOM05D003010 ORTHO05D003623 4.4e-06 54.7 91 39.6
Lsat_1_v5_gn_5_97941 Lactuca sativa HOM05D003010 ORTHO05D003623 4.4e-06 54.7 93 39.8
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 4.4e-06 54.7 91 38.5
HPP92_023172 Vanilla planifolia HOM05D003010 ORTHO05D003623 4.4e-06 54.7 90 41.1
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 5.8e-06 54.3 90 45.6
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 5.8e-06 54.3 91 41.8
AUR62033453 Chenopodium quinoa HOM05D003010 ORTHO05D010439 7.6e-06 53.9 87 41.4
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 7.6e-06 53.9 91 40.7
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 9.9e-06 53.5 94 39.4
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 9.9e-06 53.5 94 39.4
TPR.G13393 Trifolium pratense HOM05D003010 ORTHO05D003623 9.9e-06 53.5 94 38.3


User provided reference genes

Program Settings