Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2528.1 1267 100.0
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2358.6 1268 91.8
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2357.0 1267 92.2
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2349.3 1267 91.6
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2340.1 1267 91.7
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2333.9 1267 91.2
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2323.5 1268 91.3
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 2302.3 1267 90.6
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 2268.0 1267 88.9
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2224.9 1269 85.9
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2223.7 1270 85.6
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2218.4 1269 85.9
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2218.0 1271 85.4
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2204.9 1268 84.6
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2200.6 1271 84.7
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2197.2 1268 85.0
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2194.1 1268 85.2
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2193.3 1268 84.9
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2192.9 1272 84.5
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2192.2 1264 85.0
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2187.1 1268 84.9
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2186.4 1268 84.7
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2185.2 1263 84.4
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2180.2 1266 84.2
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2178.3 1263 84.1
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2175.2 1269 84.0
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2174.8 1268 84.0
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2173.7 1271 83.6
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2172.5 1268 83.8
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2172.1 1268 83.8
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2171.0 1269 83.4
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2170.2 1271 84.3
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2169.4 1268 83.2
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2168.3 1271 83.8
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2166.7 1269 83.2
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2166.7 1271 84.1
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2166.0 1271 83.9
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2165.6 1268 84.1
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2165.6 1271 83.3
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2163.7 1271 82.8
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2163.3 1271 84.1
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2161.7 1268 82.9
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2161.3 1271 83.9
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2158.6 1271 83.8
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2156.3 1271 82.7
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 2155.9 1264 83.5
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2152.5 1268 82.9
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2150.2 1271 82.8
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2150.2 1268 83.6
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2149.8 1271 82.1
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2149.8 1266 83.0
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2149.4 1267 82.6
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2149.4 1268 82.7
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2149.0 1263 84.0
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2148.6 1271 82.3
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2148.6 1277 83.1
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2147.9 1271 82.1
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2147.5 1268 82.9
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2147.5 1271 82.0
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2147.1 1271 81.9
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2146.7 1267 83.0
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2145.2 1267 83.2
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2144.8 1268 83.0
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2144.4 1271 81.8
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2142.9 1271 82.1
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2140.5 1268 82.3
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2140.5 1268 82.4
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2138.6 1271 82.4
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2138.2 1269 82.4
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2136.7 1269 82.5
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2136.3 1267 82.5
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2129.8 1268 82.8
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2129.8 1271 83.1
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2125.5 1270 82.6
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2123.2 1267 81.6
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2119.7 1271 81.4
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2117.0 1270 82.1
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2112.8 1240 83.6
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2110.9 1250 82.3
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2108.6 1249 82.5
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2105.5 1266 80.6
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2096.2 1267 80.7
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2094.3 1271 81.0
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2092.8 1209 85.1
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2084.3 1272 79.9
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2083.5 1261 80.4
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2073.5 1272 80.7
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 2060.4 1268 80.3
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2052.3 1266 79.3
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2049.6 1266 80.1
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2041.2 1271 79.7
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 2015.7 1268 78.4
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1990.7 1086 91.3
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 1983.4 1271 77.4
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1950.3 1267 76.0
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1949.1 1269 74.5
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1929.8 1162 82.3
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1903.6 1272 74.9
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1869.0 1279 72.6
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1850.5 1192 77.5
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1843.2 1249 73.3
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1840.5 1273 72.0
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1825.1 1072 82.2
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1783.5 962 90.3
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1779.2 1128 79.0
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1770.4 1268 71.1
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1736.1 1269 70.0
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1557.0 1047 73.8
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1549.3 1322 60.5
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1364.4 813 82.3
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1360.9 1264 59.3
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1317.8 1325 53.4
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1297.0 1387 52.3
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1292.3 1032 68.4
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1229.2 725 82.5
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1120.1 812 70.7
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 6.0e-263 911.8 570 80.2
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 4.8e-260 902.1 1245 41.1
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 9.9e-258 894.4 503 87.9
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-225 787.3 650 62.2
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 1.2e-218 764.6 525 74.3
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.1e-195 688.3 455 76.3
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.2e-186 658.3 390 85.1
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 2.8e-127 461.1 359 65.2
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 8.2e-119 433.0 270 83.3
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 3.2e-115 421.0 312 70.8
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 8.3e-79 300.1 481 41.8
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 1.6e-69 269.2 171 77.2
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 1.1e-67 263.1 171 76.0
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 4.3e-67 261.2 171 75.4
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 6.4e-63 247.3 138 89.1
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 2.5e-59 235.3 234 55.1
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 6.2e-50 204.1 117 82.1
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 9.9e-40 170.2 148 64.9
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 6.4e-39 167.5 91 85.7
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 1.6e-37 162.9 182 52.7
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 8.1e-34 150.6 101 66.3
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 9.0e-25 120.6 104 58.7


User provided reference genes

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