Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 1.2e-152 543.1 273 100.0
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 1.6e-104 383.3 291 73.9
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 2.6e-99 365.9 279 73.1
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 3.8e-98 362.1 280 71.8
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 8.5e-98 360.9 291 70.1
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 4.2e-97 358.6 289 69.2
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 9.4e-97 357.5 293 68.9
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.2e-94 350.5 284 70.8
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 2.8e-85 319.3 296 66.9
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 9.1e-84 314.3 279 64.9
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 4.5e-83 312.0 280 65.4
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 2.9e-82 309.3 288 67.0
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 2.5e-81 306.2 283 64.7
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 2.5e-81 306.2 283 64.7
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 9.2e-76 287.7 287 59.2
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 2.3e-74 283.1 289 55.7
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 2.3e-71 273.1 293 56.0
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 1.2e-70 270.8 291 57.0
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 1.1e-68 264.2 286 52.8
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 4.1e-68 262.3 286 52.4
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 9.2e-68 261.2 286 54.2
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 2.7e-67 259.6 277 53.4
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 2.7e-67 259.6 286 51.7
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 6.0e-67 258.5 275 53.1
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 1.0e-66 257.7 277 53.8
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 1.3e-66 257.3 286 54.9
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 3.0e-66 256.1 277 52.7
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 1.9e-65 253.4 267 53.9
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 9.5e-65 251.1 277 53.1
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 6.2e-64 248.4 275 53.8
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 8.9e-63 244.6 294 51.0
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 6.4e-61 238.4 284 53.2
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 1.1e-60 237.7 286 51.0
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 7.1e-60 235.0 302 48.7
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 9.2e-60 234.6 286 52.1
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 7.8e-59 231.5 281 51.6
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 1.7e-58 230.3 277 51.3
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 1.7e-58 230.3 267 54.3
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 2.3e-58 229.9 270 53.0
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 5.6e-57 225.3 296 52.0
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 5.6e-57 225.3 269 48.0
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 7.3e-57 224.9 273 48.4
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 9.5e-57 224.6 269 47.6
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 1.6e-56 223.8 274 49.6
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 1.5e-54 217.2 283 50.9
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 4.9e-53 212.2 275 47.3
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 3.2e-52 209.5 262 46.9
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 9.2e-52 208.0 295 47.5
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 9.2e-52 208.0 254 47.2
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.6e-51 207.2 281 44.5
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 1.6e-51 207.2 293 45.1
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 2.7e-51 206.5 251 53.8
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 3.3e-49 199.5 255 46.7
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 5.6e-49 198.7 266 46.2
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 8.1e-48 194.9 243 49.0
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 8.1e-48 194.9 332 43.1
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 8.9e-47 191.4 332 42.8
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 1.3e-45 187.6 218 54.1
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 2.9e-45 186.4 261 44.4
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 3.8e-45 186.0 364 41.8
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 4.9e-45 185.7 199 58.3
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 1.1e-44 184.5 228 51.3
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 2.4e-44 183.3 286 45.1
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 1.6e-43 180.6 302 42.1
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 1.6e-43 180.6 302 42.1
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.6e-43 180.6 231 47.2
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 1.6e-43 180.6 207 54.6
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 2.7e-43 179.9 301 42.2
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 2.7e-43 179.9 301 42.2
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 6.0e-43 178.7 310 42.6
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 1.7e-42 177.2 253 45.5
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 3.0e-42 176.4 210 51.0
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 5.1e-42 175.6 282 42.6
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 6.6e-42 175.3 272 46.0
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 1.5e-41 174.1 295 42.4
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 3.3e-41 172.9 316 41.8
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 4.3e-41 172.6 298 42.3
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 4.3e-41 172.6 316 41.5
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 9.6e-41 171.4 305 40.7
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 2.8e-40 169.9 226 48.2
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 4.8e-40 169.1 294 43.5
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.8e-39 167.2 271 43.2
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 2.4e-39 166.8 275 43.3
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 3.1e-39 166.4 274 42.7
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 1.5e-38 164.1 272 40.8
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 2.0e-38 163.7 280 41.8
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 1.3e-37 161.0 126 68.3
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 2.9e-37 159.8 330 37.3
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 4.9e-37 159.1 286 42.0
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 8.4e-37 158.3 271 42.1
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 1.2e-35 154.5 258 40.7
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 6.0e-35 152.1 233 48.1
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 6.0e-35 152.1 226 44.2
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 1.0e-34 151.4 336 36.3
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 3.0e-34 149.8 205 46.8
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 4.3e-33 146.0 216 45.4
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 2.1e-32 143.7 316 36.4
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 2.8e-32 143.3 245 39.6
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 2.8e-32 143.3 245 39.6
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 6.0e-27 125.6 249 39.8
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 6.9e-15 85.5 109 53.2
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.1e-11 73.9 94 43.6
BcaC09g50696 Brassica carinata HOM05D007298 ORTHO05D009226 1.5e-09 67.8 62 54.8
C01p22230 Brassica napus HOM05D007298 ORTHO05D009226 1.5e-09 67.8 62 54.8
BolC1t02153H Brassica oleracea HOM05D007298 ORTHO05D009226 1.5e-09 67.8 62 54.8
BcaC01g06536 Brassica carinata HOM05D007298 ORTHO05D009226 5.9e-06 55.8 106 40.6
SEGI_13333 Sequoiadendron giganteum HOM05D007298 ORTHO05D009226 7.7e-06 55.5 169 33.1


User provided reference genes

Program Settings