Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 4.1e-190 667.9 344 100.0
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 3.9e-172 608.2 345 88.7
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 3.1e-169 598.6 345 87.0
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 1.7e-167 592.8 347 85.3
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.2e-167 592.4 347 87.0
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 3.5e-165 585.1 346 87.9
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.3e-164 583.2 349 84.5
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 1.7e-164 582.8 344 84.6
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 3.9e-164 581.6 326 88.0
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 5.1e-164 581.3 324 88.0
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 4.7e-162 574.7 308 91.2
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.5e-155 553.1 341 80.6
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 2.6e-152 542.3 324 82.4
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 5.8e-152 541.2 326 80.1
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 5.8e-152 541.2 351 78.6
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 7.6e-152 540.8 324 82.7
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 7.6e-152 540.8 325 82.2
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 9.9e-152 540.4 325 80.0
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.3e-151 540.0 345 76.8
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.7e-151 539.7 325 81.8
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.8e-151 538.5 344 76.2
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 6.4e-151 537.7 344 77.0
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 6.4e-151 537.7 345 80.3
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.1e-150 537.0 344 77.0
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.4e-150 536.6 327 81.0
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.9e-150 536.2 324 80.9
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.9e-150 536.2 324 82.7
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.4e-150 535.8 327 81.3
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 4.2e-150 535.0 326 79.1
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 1.6e-149 533.1 346 78.0
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 6.0e-149 531.2 345 78.8
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.3e-148 530.0 326 80.1
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 3.0e-148 528.9 327 80.7
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 5.1e-148 528.1 333 78.7
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 6.6e-148 527.7 325 80.0
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 8.7e-148 527.3 325 79.4
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.1e-147 526.9 344 77.6
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 2.5e-147 525.8 333 78.4
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.3e-147 525.4 327 77.7
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 5.6e-147 524.6 324 78.7
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 5.6e-147 524.6 333 79.3
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 5.6e-147 524.6 345 76.8
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 8.1e-146 520.8 308 82.1
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 3.1e-145 518.8 317 81.4
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 4.0e-145 518.5 321 80.4
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 4.0e-145 518.5 306 83.3
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.5e-144 516.5 341 77.1
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.5e-144 516.5 348 74.7
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 2.6e-144 515.8 304 81.9
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 4.4e-144 515.0 329 76.9
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 2.9e-143 512.3 327 76.8
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 6.4e-143 511.1 329 77.2
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 8.4e-143 510.8 329 77.2
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 8.4e-143 510.8 325 78.2
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.1e-142 510.4 334 76.6
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.1e-142 510.4 334 76.6
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.4e-142 510.0 331 77.3
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.4e-142 509.2 327 77.1
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.4e-142 509.2 327 76.8
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 3.2e-142 508.8 329 77.2
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 5.4e-142 508.1 327 76.5
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 7.1e-142 507.7 327 75.2
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 9.3e-142 507.3 336 75.9
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.6e-141 506.5 338 75.4
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 2.7e-141 505.8 327 76.1
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 4.6e-141 505.0 403 65.8
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 7.9e-141 504.2 326 75.5
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 7.9e-141 504.2 367 70.0
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 1.0e-140 503.8 318 77.7
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 1.0e-140 503.8 327 76.1
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.3e-140 503.4 327 75.8
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.3e-140 503.4 293 81.2
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.3e-140 503.4 333 74.8
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 5.1e-140 501.5 324 75.0
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 8.7e-140 500.7 327 75.8
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 8.7e-140 500.7 325 75.1
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 8.7e-140 500.7 324 75.0
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 8.7e-140 500.7 308 79.9
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.1e-139 500.4 324 74.7
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 5.6e-139 498.0 329 74.8
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 7.3e-139 497.7 325 74.8
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.6e-138 496.5 329 74.8
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 3.6e-138 495.4 311 75.2
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 3.1e-137 492.3 344 71.8
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 5.8e-136 488.0 291 80.1
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 5.8e-136 488.0 324 74.1
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 7.6e-136 487.6 284 81.3
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 7.6e-136 487.6 337 71.8
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 1.3e-135 486.9 318 76.1
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 2.9e-135 485.7 331 74.6
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.1e-134 483.8 357 68.6
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.4e-134 483.4 324 75.3
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 4.2e-134 481.9 327 72.5
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 4.2e-134 481.9 270 85.2
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 5.4e-134 481.5 325 74.5
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 6.0e-133 478.0 293 77.5
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.0e-132 477.2 325 74.5
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 3.0e-132 475.7 313 76.0
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.5e-131 473.4 327 74.0
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.3e-131 472.2 288 77.8
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 2.0e-128 463.0 272 81.2
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.7e-127 459.9 340 71.8
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 8.4e-127 457.6 324 70.1
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 4.2e-126 455.3 270 80.7
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 4.2e-126 455.3 305 76.1
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.1e-123 447.2 316 72.5
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 4.5e-120 435.3 298 77.2
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 1.6e-117 426.8 314 72.9
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 3.0e-116 422.5 286 70.3
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 4.3e-115 418.7 314 69.4
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 3.7e-114 415.6 285 68.1
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 2.4e-113 412.9 287 70.0
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.3e-111 407.1 257 78.6
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 3.8e-111 405.6 272 70.6
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.2e-110 402.5 277 73.3
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 4.3e-107 392.1 258 76.0
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 2.6e-104 382.9 239 85.4
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 3.8e-103 379.0 255 74.5
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 4.2e-102 375.6 278 69.1
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.4e-97 360.5 309 61.2
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.3e-92 343.2 228 75.0
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.9e-86 323.6 217 75.6
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.1e-65 254.6 324 48.5
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.5e-64 249.6 139 84.2
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 5.9e-64 248.8 153 75.8
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 2.6e-59 233.4 139 81.3
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.8e-59 231.5 169 69.8
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 8.6e-55 218.4 132 77.3
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.9e-54 217.2 108 91.7
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.8e-52 210.7 147 72.8
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 8.3e-50 201.8 108 85.2
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 6.6e-39 165.6 129 58.9
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 9.6e-38 161.8 283 41.3
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 1.6e-37 161.0 112 70.5
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 6.4e-34 149.1 307 33.9
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 3.5e-32 143.3 117 63.2
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 6.9e-28 129.0 179 44.1
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 9.3e-25 118.6 86 67.4
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 6.0e-24 115.9 287 31.7
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.9e-22 110.9 87 59.8
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.9e-19 98.6 71 64.8
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 4.9e-18 96.3 53 81.1
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 8.4e-18 95.5 52 84.6
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 1.1e-17 95.1 92 56.5
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.4e-17 94.7 93 57.0
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 1.6e-16 91.3 53 83.0
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 4.6e-16 89.7 53 77.4
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 3.0e-15 87.0 79 50.6
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 5.8e-11 72.8 37 81.1
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 3.2e-09 67.0 57 63.2
arahy.Tifrunner.gnm1.ann1.8K4VEX Arachis hypogaea HOM05D000217 ORTHO05D000121 6.7e-07 59.3 80 48.8
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 4.3e-06 56.6 29 75.9
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 7.4e-06 55.8 31 80.6
arahy.Tifrunner.gnm1.ann1.XAPW6D Arachis hypogaea HOM05D000023 ORTHO05D009998 9.6e-06 55.5 35 74.3


User provided reference genes

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