Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 8.4e-256 887.5 875 100.0
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.1e-165 588.2 885 75.9
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 5.4e-162 575.9 873 80.8
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 5.4e-162 575.9 873 80.8
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 2.3e-160 570.5 888 77.5
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.5e-159 567.8 874 78.7
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 1.6e-153 547.7 870 79.0
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.9e-152 543.1 877 77.5
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 7.3e-151 538.9 873 76.3
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 3.2e-146 523.5 876 78.9
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 5.1e-120 436.4 876 72.1
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 2.9e-115 420.6 848 72.1
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 9.7e-111 405.6 872 70.6
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 2.3e-104 384.4 879 70.8
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 1.2e-92 345.5 877 68.1
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 7.7e-92 342.8 882 66.0
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 7.2e-90 336.3 875 69.4
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.0e-88 332.4 879 69.3
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 2.6e-87 327.8 871 68.8
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 1.3e-86 325.5 874 66.0
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.3e-86 325.5 874 67.3
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 3.1e-85 320.9 873 67.8
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 4.1e-85 320.5 876 65.9
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 1.3e-83 315.5 881 67.5
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 3.2e-82 310.8 879 68.7
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 5.5e-82 310.1 878 67.1
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 9.4e-82 309.3 867 67.5
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 2.3e-80 304.7 879 68.4
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 5.2e-80 303.5 875 66.2
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 1.5e-79 302.0 881 63.5
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.5e-79 302.0 881 56.8
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 2.0e-79 301.6 870 68.0
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 9.8e-79 299.3 877 67.3
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 1.2e-76 292.4 881 62.8
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 3.5e-76 290.8 879 66.3
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 1.2e-73 282.3 875 66.2
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 8.0e-73 279.6 875 67.2
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 3.4e-71 274.2 875 66.6
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 3.4e-71 274.2 879 65.3
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 3.1e-69 267.7 885 42.0
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 1.6e-68 265.4 876 66.4
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 6.6e-67 260.0 871 66.4
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 9.5e-66 256.1 871 66.1
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 9.5e-66 256.1 888 65.2
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 2.1e-65 255.0 878 62.3
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 6.1e-65 253.4 862 63.9
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 6.1e-65 253.4 871 66.0
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 5.2e-64 250.4 883 63.4
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 1.5e-63 248.8 872 64.9
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 2.2e-62 245.0 876 64.5
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 5.4e-61 240.4 873 62.9
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 2.0e-60 238.4 874 61.1
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 3.5e-60 237.7 870 64.1
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.0e-59 236.1 874 62.0
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 1.3e-59 235.7 871 63.4
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 8.6e-59 233.0 875 63.3
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 5.6e-58 230.3 875 63.0
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 1.2e-57 229.2 445 54.8
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 1.0e-56 226.1 879 61.2
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.0e-56 226.1 202 56.4
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 1.5e-55 222.2 876 64.7
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 6.4e-54 216.9 869 63.3
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 8.3e-54 216.5 876 62.4
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 1.9e-53 215.3 869 64.1
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 1.2e-52 212.6 879 63.1
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 1.3e-51 209.1 875 63.3
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 2.3e-51 208.4 366 66.9
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 3.0e-51 208.0 875 62.1
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 8.6e-51 206.5 875 61.9
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 8.6e-51 206.5 875 61.8
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.9e-50 205.3 804 67.3
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 2.5e-50 204.9 877 61.3
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 7.3e-50 203.4 871 62.5
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 1.6e-49 202.2 902 52.7
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.6e-49 202.2 836 64.2
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 2.8e-49 201.4 372 64.2
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 4.7e-49 200.7 836 64.1
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.1e-48 199.5 367 65.9
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 1.4e-48 199.1 870 62.1
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 1.4e-48 199.1 197 48.7
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 1.8e-48 198.7 366 65.8
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 6.8e-48 196.8 784 67.7
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.2e-47 196.1 386 64.0
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 7.5e-47 193.4 836 61.2
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.4e-45 189.1 873 63.6
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 2.1e-41 175.3 382 59.9
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 1.2e-39 169.5 875 60.3
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 2.2e-38 165.2 880 59.7
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 8.4e-38 163.3 869 61.9
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 1.3e-35 156.0 180 43.9
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 5.1e-35 154.1 873 56.6
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.1e-34 152.9 857 58.9
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.2e-33 149.4 862 57.1
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.1e-33 148.7 415 44.8
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.8e-32 145.6 102 70.6
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 3.4e-31 141.4 389 57.3
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 2.5e-26 125.2 166 43.4
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 7.3e-26 123.6 183 36.1
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 6.2e-25 120.6 252 37.7
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.9e-22 111.7 261 33.7
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 2.9e-22 111.7 378 54.0
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 3.2e-21 108.2 151 41.1
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.3e-19 102.8 130 43.8
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 7.4e-18 97.1 397 51.9
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.7e-14 85.9 324 58.0
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.1e-12 79.0 113 43.4
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 2.6e-07 62.0 105 54.3


User provided reference genes

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