Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0005287 Lotus japonicus HOM05D007570 ORTHO05D009365 1.2e-149 535.0 1033 100.0
Psat7g112960 Pisum sativum HOM05D007570 ORTHO05D009365 5.9e-83 313.5 360 73.9
Glyma.07G194900 Glycine max HOM05D007570 ORTHO05D009365 1.0e-82 312.8 357 74.2
Lalb_Chr16g0383631 Lupinus albus HOM05D007570 ORTHO05D009365 2.2e-82 311.6 358 74.0
arahy.Tifrunner.gnm1.ann1.3SI8EE Arachis hypogaea HOM05D000112 ORTHO05D009365 2.9e-82 311.2 334 77.8
arahy.Tifrunner.gnm1.ann1.K3ZWQ5 Arachis hypogaea HOM05D000112 ORTHO05D009365 2.9e-82 311.2 334 77.8
Medtr4g089005 Medicago truncatula HOM05D007570 ORTHO05D009365 2.0e-78 298.5 354 72.9
TPR.G12015 Trifolium pratense HOM05D007570 ORTHO05D009365 1.3e-77 295.8 354 72.6
VMungo0251G2923 Vigna mungo HOM05D007570 ORTHO05D009365 2.8e-77 294.7 358 73.2
Ca_18529_v3 Cicer arietinum L. HOM05D001301 ORTHO05D009365 4.8e-77 293.9 358 72.3
Phvul.002G227100 Phaseolus vulgaris HOM05D007570 ORTHO05D009365 1.1e-76 292.7 358 73.5
Medtr8g064830 Medicago truncatula HOM05D007570 ORTHO05D009365 1.1e-73 282.7 359 71.0
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 5.4e-60 237.3 343 64.7
Ciclev10030585m.g Citrus clementina HOM05D007570 ORTHO05D009365 4.4e-54 217.6 347 63.1
Sabra19G0053700 Salix brachista HOM05D007570 ORTHO05D009365 4.4e-54 217.6 334 66.5
MD11G1161200 Malus domestica HOM05D007570 ORTHO05D009365 8.3e-53 213.4 160 62.5
Atru.chr6.18 Acer truncatum HOM05D007570 ORTHO05D009365 1.4e-52 212.6 342 62.9
Potri.019G043101 Populus trichocarpa HOM05D007570 ORTHO05D009365 5.4e-52 210.7 351 63.0
Thecc.05G226900 Theobroma cacao HOM05D007570 ORTHO05D009365 7.0e-52 210.3 310 69.7
CiPaw.05G211100 Carya illinoinensis HOM05D007570 ORTHO05D009365 3.0e-50 204.9 361 62.3
FvH4_7g02371 Fragaria vesca HOM05D007570 ORTHO05D009365 4.3e-49 201.1 353 61.2
FAN06G1073 Fragaria x ananassa HOM05D007570 ORTHO05D009365 4.7e-48 197.6 353 60.9
Gohir.A01G216000 Gossypium hirsutum HOM05D007570 ORTHO05D009365 6.2e-48 197.2 354 61.3
TWI34G1038 Tripterygium wilfordii HOM05D007570 ORTHO05D009365 1.5e-46 192.6 349 61.3
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 3.4e-46 191.4 312 66.0
Gohir.D01G204800 Gossypium hirsutum HOM05D007570 ORTHO05D009365 4.4e-46 191.0 311 66.2
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 7.5e-46 190.3 351 60.1
Gorai.002G249100 Gossypium raimondii HOM05D007570 ORTHO05D009365 9.8e-46 189.9 311 65.9
Duzib106G0838 Durio zibethinus HOM05D007570 ORTHO05D009365 3.2e-44 184.9 357 60.8
FAN01G3111 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.2e-43 183.0 171 53.8
Eucgr.A02378 Eucalyptus grandis HOM05D007570 ORTHO05D009365 6.0e-43 180.6 144 59.7
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 5.1e-42 177.6 151 55.0
Manes.08G159400 Manihot esculenta HOM05D007570 ORTHO05D009365 6.6e-42 177.2 353 58.1
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 1.1e-41 176.4 142 56.3
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 1.2e-40 172.9 207 48.8
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 1.6e-40 172.6 207 48.8
CSS0011257 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 3.6e-40 171.4 312 49.4
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 6.2e-40 170.6 179 53.1
CSS0020002 Camellia sinensis var. sinensis HOM05D007570 ORTHO05D009365 1.5e-38 166.0 312 46.2
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 2.6e-38 165.2 145 54.5
Nitab4.5_0008329g0060 Nicotiana tabacum HOM05D001281 ORTHO05D009365 3.4e-38 164.9 139 55.4
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 1.4e-36 159.5 176 50.0
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 2.4e-36 158.7 137 59.9
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 1.2e-35 156.4 381 37.0
Aqoxy5G04288 Aquilegia oxysepala HOM05D007570 ORTHO05D009365 1.0e-34 153.3 367 55.6
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 1.3e-34 152.9 200 45.5
RcHm_v2.0_Chr1g0384651 Rosa chinensis HOM05D007570 ORTHO05D009365 1.5e-33 149.4 357 56.0
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 9.6e-33 146.7 275 44.0
Cfa016108 Carpinus fangiana HOM05D007570 ORTHO05D009365 1.2e-32 146.4 241 71.8
Hund19367 Selenicereus undatus HOM05D007570 ORTHO05D009365 6.2e-32 144.1 143 53.1
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 4.0e-31 141.4 138 50.0
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 8.9e-31 140.2 308 38.0
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 1.2e-30 139.8 173 47.4
MSTRG.27980 Avicennia marina HOM05D007570 ORTHO05D009365 3.4e-30 138.3 138 51.4
PGSC0003DMG400024750 Solanum tuberosum HOM05D007570 ORTHO05D009365 4.4e-30 137.9 145 48.3
Sopen01g043040 Solanum pennellii HOM05D007570 ORTHO05D009365 7.6e-30 137.1 145 49.0
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 1.7e-29 136.0 331 36.0
Actinidia35565 Actinidia chinensis HOM05D007570 ORTHO05D009365 1.1e-28 133.3 272 44.9
Thhalv10012597m.g Eutrema salsugineum HOM05D007570 ORTHO05D009365 2.1e-27 129.0 144 47.9
Nn1g08626 Nelumbo nucifera HOM05D007570 ORTHO05D009365 7.8e-27 127.1 198 39.9
DCAR_001944 Daucus carota HOM05D007570 ORTHO05D009365 2.3e-26 125.6 108 56.5
HPP92_020822 Vanilla planifolia HOM05D007570 ORTHO05D009365 3.9e-26 124.8 145 45.5
Migut.N02077 Erythranthe guttata HOM05D007570 ORTHO05D009365 1.1e-25 123.2 126 50.0
HanXRQChr10g0294781 Helianthus annuus HOM05D007570 ORTHO05D009365 1.1e-25 123.2 139 48.9
AL6G25570 Arabidopsis lyrata HOM05D007570 ORTHO05D009365 3.3e-25 121.7 165 43.6
SalBow3G3428 Salvia bowleyana HOM05D007570 ORTHO05D009365 6.2e-24 117.5 99 56.6
CAN.G665.19 Capsicum annuum HOM05D007570 ORTHO05D009365 1.1e-23 116.7 156 40.4
Sp6g29270 Schrenkiella parvula HOM05D007570 ORTHO05D009365 4.0e-23 114.8 144 45.1
TAR625G0236 Trochodendron aralioides HOM05D007570 ORTHO05D009365 2.9e-21 108.6 355 51.5
CARHR198540 Cardamine hirsuta HOM05D007570 ORTHO05D009365 1.4e-20 106.3 144 42.4
MD00G1202400 Malus domestica HOM05D007570 ORTHO05D009365 1.4e-20 106.3 82 63.4
BcaB08g36948 Brassica carinata HOM05D007570 ORTHO05D009365 1.9e-20 105.9 185 39.5
BcaC04g19010 Brassica carinata HOM05D007570 ORTHO05D009365 3.2e-20 105.1 167 41.9
A10p23910 Brassica napus HOM05D007570 ORTHO05D009365 9.3e-20 103.6 167 41.3
BraA10t44455Z Brassica rapa HOM05D007570 ORTHO05D009365 9.3e-20 103.6 167 41.3
EL10Ac2g03647 Beta vulgaris HOM05D007570 ORTHO05D009365 2.1e-19 102.4 108 50.9
C09p62380 Brassica napus HOM05D007570 ORTHO05D009365 2.1e-19 102.4 163 42.3
Carub.0006s1294 Capsella rubella HOM05D007570 ORTHO05D009365 2.1e-19 102.4 142 40.1
BolC9t59076H Brassica oleracea HOM05D007570 ORTHO05D009365 3.5e-19 101.7 167 42.5
AT5G14770 Arabidopsis thaliana HOM05D007570 ORTHO05D009365 1.0e-18 100.1 144 41.0
FAN03G2441 Fragaria x ananassa HOM05D002709 ORTHO05D002914 8.7e-18 97.1 154 42.2
Glyma.13G181601 Glycine max HOM05D007570 ORTHO05D009365 7.3e-17 94.0 51 84.3
AUR62028022 Chenopodium quinoa HOM05D007570 ORTHO05D009365 4.8e-16 91.3 80 53.8
FAN10G3422 Fragaria x ananassa HOM05D007570 ORTHO05D009365 1.2e-14 86.7 114 46.5
Oeu043366.2 Olea europaea HOM05D007570 ORTHO05D009365 3.4e-14 85.1 72 54.2
Cpa.g.sc909.2 Carica papaya HOM05D007570 ORTHO05D009365 3.2e-12 78.6 237 27.0
ECA234G3939 Erigeron canadensis HOM05D007570 ORTHO05D009365 4.6e-11 74.7 109 39.4
Lj5C430G7 Lonicera japonica HOM05D007570 ORTHO05D009365 3.9e-10 71.6 140 37.1
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 6.7e-10 70.9 114 35.1
Prupe.2G007100 Prunus persica HOM05D007570 ORTHO05D009365 1.9e-09 69.3 51 62.7
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 4.0e-07 61.6 113 32.7
HPP92_019906 Vanilla planifolia HOM05D007063 ORTHO05D008822 5.3e-07 61.2 137 30.7
Aa31LG11G14690 Aethionema arabicum HOM05D007570 ORTHO05D009365 6.9e-07 60.8 34 73.5
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 6.9e-07 60.8 132 31.1
MD00G1202300 Malus domestica HOM05D007570 ORTHO05D009365 6.9e-07 60.8 69 44.9
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 6.9e-07 60.8 110 32.7
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.2e-06 60.1 140 30.0
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 1.2e-06 60.1 136 29.4
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-06 60.1 106 31.1
FAN05G2826 Fragaria x ananassa HOM05D000001 ORTHO05D009676 1.2e-06 60.1 110 35.5
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 1.2e-06 60.1 129 28.7
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 2.0e-06 59.3 104 32.7
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 2.0e-06 59.3 134 28.4
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 2.0e-06 59.3 89 32.6
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 2.0e-06 59.3 131 29.8
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 2.0e-06 59.3 131 29.8
Haze_00350 Corylus avellana HOM05D007570 ORTHO05D009365 2.6e-06 58.9 78 46.2
Potri.016G082200 Populus trichocarpa HOM05D000001 ORTHO05D009676 2.6e-06 58.9 107 32.7
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 2.6e-06 58.9 199 25.6
CDE06G1092 Ceratophyllum demersum HOM05D007570 ORTHO05D008530 3.4e-06 58.5 50 52.0
MD11G1161100 Malus domestica HOM05D007570 ORTHO05D009365 3.4e-06 58.5 51 56.9
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 3.4e-06 58.5 139 29.5
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 3.4e-06 58.5 132 28.8
Aa31LG8G14080 Aethionema arabicum HOM05D005287 ORTHO05D006893 4.5e-06 58.2 136 30.1
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 4.5e-06 58.2 131 28.2
FAN09G4588 Fragaria x ananassa HOM05D000001 ORTHO05D009676 4.5e-06 58.2 110 34.5
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 4.5e-06 58.2 130 28.5
Lj5C430G10 Lonicera japonica HOM05D007570 ORTHO05D009365 4.5e-06 58.2 49 57.1
Sabra16G0089900 Salix brachista HOM05D000001 ORTHO05D009676 4.5e-06 58.2 115 31.3
GSVIVG01013840001 Vitis vinifera HOM05D007570 ORTHO05D009365 4.5e-06 58.2 46 58.7
Aa31LG11G14680 Aethionema arabicum HOM05D007570 ORTHO05D009365 5.8e-06 57.8 62 51.6
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 5.8e-06 57.8 131 29.8
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 5.8e-06 57.8 131 29.8
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.8e-06 57.8 201 26.9
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 5.8e-06 57.8 140 26.4
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 5.8e-06 57.8 105 28.6
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 7.6e-06 57.4 97 34.0
arahy.Tifrunner.gnm1.ann1.LQ1LZI Arachis hypogaea HOM05D007409 ORTHO05D009264 7.6e-06 57.4 117 31.6
FAN02G2208 Fragaria x ananassa HOM05D000001 ORTHO05D009676 7.6e-06 57.4 110 33.6
Medtr1g039290 Medicago truncatula HOM05D010072 ORTHO05D011797 7.6e-06 57.4 107 29.0
Medtr2g018820 Medicago truncatula HOM05D007486 ORTHO05D003673 7.6e-06 57.4 135 28.9
VMungo1215G2284 Vigna mungo HOM05D000001 ORTHO05D009676 7.6e-06 57.4 107 33.6
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 1.0e-05 57.0 138 29.0
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 1.0e-05 57.0 110 30.9
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 1.0e-05 57.0 139 28.8
Migut.N00468 Erythranthe guttata HOM05D007128 ORTHO05D009059 1.0e-05 57.0 123 30.1
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 1.0e-05 57.0 134 29.1
Oeu007697.1 Olea europaea HOM05D005287 ORTHO05D006893 1.0e-05 57.0 157 29.9


User provided reference genes

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