Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2743.8 1384 100.0
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2600.5 1385 94.0
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2592.8 1385 94.0
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2587.0 1385 93.7
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2583.1 1392 93.2
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2571.6 1387 93.2
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2570.8 1391 92.9
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2507.6 1392 90.2
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2503.0 1483 86.6
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2442.5 1486 84.8
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2382.8 1392 85.6
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2357.8 1392 85.0
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2348.9 1392 84.5
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2347.0 1392 84.0
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2339.3 1391 84.1
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2337.0 1393 83.6
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2337.0 1392 83.7
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2334.7 1392 84.4
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2332.8 1393 83.8
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2329.3 1394 83.3
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2328.9 1392 84.1
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2325.1 1393 83.1
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2323.5 1394 83.1
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2317.0 1398 83.1
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2314.7 1392 82.8
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2311.6 1394 82.9
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2311.2 1391 83.2
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2309.3 1393 82.8
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2308.5 1393 83.1
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2304.6 1391 83.1
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2302.3 1394 82.2
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2290.0 1391 81.2
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2288.1 1392 83.1
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2276.1 1392 81.1
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2275.0 1392 81.1
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2271.9 1385 81.2
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2271.5 1404 80.8
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2269.6 1394 80.9
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2263.0 1339 83.6
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2261.9 1437 80.3
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2248.4 1393 80.6
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2247.6 1392 80.4
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2246.5 1408 81.3
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2242.2 1392 80.7
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2231.8 1390 79.1
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2227.6 1390 79.0
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2216.4 1393 79.8
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2213.3 1429 78.2
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2212.2 1388 80.2
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2207.6 1382 79.7
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2204.9 1400 79.4
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2198.3 1391 78.2
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2194.1 1388 78.5
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2189.8 1403 77.0
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2187.9 1387 79.0
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2187.1 1403 77.6
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2186.8 1388 78.9
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2183.7 1411 77.7
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2183.3 1410 77.7
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2182.9 1390 78.6
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2178.3 1410 77.4
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2178.3 1410 77.1
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2174.4 1405 77.8
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2173.7 1406 77.8
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2173.3 1406 77.7
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2170.2 1406 77.5
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2170.2 1406 77.6
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2166.3 1419 76.3
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2165.6 1398 77.1
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2145.9 1401 76.7
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2144.8 1374 77.9
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2142.5 1416 76.6
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2140.2 1393 76.6
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2123.6 1255 84.0
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2059.6 1420 74.7
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2051.2 1226 82.6
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2027.7 1702 63.9
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1999.9 1354 74.2
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1995.7 1346 74.4
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1980.3 1354 73.9
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1973.7 1305 75.9
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1932.9 1332 72.1
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1927.9 1404 70.4
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1916.0 1381 71.8
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1912.9 1371 69.8
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1901.7 1187 79.0
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1864.0 1376 68.5
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1846.6 1397 66.9
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1750.3 1535 60.8
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1488.4 1159 64.1
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1464.1 929 77.3
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1414.1 1407 52.9
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1401.7 824 84.1
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1379.8 974 73.0
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1374.8 761 91.2
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1355.1 1336 51.6
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1345.1 1330 51.9
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1339.3 1365 49.9
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1226.1 717 85.1
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1195.3 816 73.5
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1177.5 876 66.9
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1139.0 793 73.1
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1112.1 589 93.9
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 9.4e-278 961.1 818 58.1
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 9.8e-251 871.3 596 74.7
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 2.7e-216 756.9 516 74.8
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.5e-206 724.5 487 75.6
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.7e-194 684.5 543 63.2
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 1.4e-185 654.8 1485 29.6
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 3.0e-159 567.4 526 58.9
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.0e-148 529.6 369 71.0
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 8.6e-146 522.7 530 60.2
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.9e-137 495.0 537 49.7
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 5.4e-116 423.7 269 79.9
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.1e-111 409.5 409 58.2
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.3e-104 386.0 215 87.4
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.5e-86 325.9 203 77.8
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 8.5e-69 266.9 297 50.5
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.0e-63 247.3 145 80.7
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 1.7e-61 242.7 133 89.5
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.7e-45 189.5 128 70.3
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.9e-37 162.2 134 66.4
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 2.8e-35 155.6 116 69.0
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.8e-34 151.0 156 50.6
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.6e-33 149.1 89 75.3
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 7.0e-31 141.0 91 76.9
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 1.2e-30 140.2 84 82.1
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.2e-30 140.2 112 64.3
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.7e-29 136.3 83 78.3
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 7.3e-28 131.0 98 69.4
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 6.2e-27 127.9 103 58.3
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 1.5e-25 123.2 150 51.3
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 5.8e-25 121.3 88 68.2
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 1.9e-23 116.3 86 65.1
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 5.4e-23 114.8 165 39.4
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.0e-23 114.4 119 57.1
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.2e-22 113.6 239 35.6
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 8.6e-21 107.5 98 54.1
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.1e-19 102.8 124 46.8
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.3e-16 93.6 100 52.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 1.3e-16 93.6 125 48.0
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 3.7e-16 92.0 51 86.3
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.2e-15 89.0 70 74.3
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 1.2e-14 87.0 50 80.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 1.2e-14 87.0 50 80.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.6e-11 76.6 44 84.1
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 1.6e-11 76.6 49 81.6
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 4.7e-11 75.1 42 88.1
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 4.9e-08 65.1 35 91.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 7.1e-07 61.2 34 88.2
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 9.2e-07 60.8 54 55.6


User provided reference genes

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