Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 9.2e-201 703.4 357 100.0
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.2e-64 251.1 315 50.8
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.2e-64 251.1 315 50.8
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 3.4e-54 216.5 307 47.9
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 3.8e-53 213.0 301 46.2
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 3.8e-53 213.0 306 46.1
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 1.4e-52 211.1 310 44.8
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.7e-50 204.1 302 46.7
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 2.1e-43 180.6 309 43.4
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 3.6e-40 169.9 302 43.7
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 1.4e-39 167.9 306 42.8
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 2.2e-37 160.6 328 38.4
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 3.8e-37 159.8 303 42.6
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 3.0e-34 150.2 310 39.0
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 4.3e-33 146.4 330 38.2
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.4e-30 136.7 345 35.4
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 7.6e-30 135.6 360 36.7
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 2.2e-29 134.0 353 34.0
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 2.9e-29 133.7 302 37.4
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 4.9e-29 132.9 343 34.4
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 4.2e-28 129.8 350 34.0
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 7.1e-28 129.0 307 36.8
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 7.1e-28 129.0 307 36.8
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 9.3e-28 128.6 334 35.9
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 1.6e-27 127.9 321 35.2
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.1e-27 127.5 308 36.7
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.1e-27 127.5 345 33.9
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.1e-27 127.5 235 42.1
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 4.6e-27 126.3 303 37.3
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 1.0e-26 125.2 355 34.1
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 3.0e-26 123.6 350 35.4
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 3.9e-26 123.2 358 33.5
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.9e-26 123.2 303 35.3
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 8.7e-26 122.1 355 33.8
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.1e-25 121.7 302 36.1
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.5e-25 121.3 342 34.2
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 2.5e-25 120.6 307 34.9
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 3.3e-25 120.2 347 33.4
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 3.3e-25 120.2 162 48.8
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 7.4e-25 119.0 160 48.8
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.3e-24 118.2 313 34.8
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.6e-24 117.9 353 32.6
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 2.1e-24 117.5 347 33.1
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.8e-24 117.1 292 34.2
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 4.8e-24 116.3 334 32.3
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 6.2e-24 115.9 350 31.7
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 8.2e-24 115.5 164 45.7
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.4e-23 114.8 169 45.0
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 1.8e-23 114.4 361 31.3
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 5.3e-23 112.8 130 50.0
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 6.9e-23 112.5 329 32.2
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 6.9e-23 112.5 340 31.2
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 6.9e-23 112.5 352 31.5
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.5e-22 111.3 130 46.9
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.5e-22 111.3 130 46.9
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 2.0e-22 110.9 341 29.6
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.0e-22 110.9 319 31.7
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 3.4e-22 110.2 357 32.5
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 4.5e-22 109.8 354 29.9
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 5.8e-22 109.4 333 31.8
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 7.6e-22 109.0 316 31.6
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 1.7e-21 107.8 135 46.7
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 2.9e-21 107.1 301 31.6
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.9e-21 107.1 310 31.6
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.9e-21 107.1 293 34.1
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.9e-21 107.1 329 31.9
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 8.4e-21 105.5 284 34.5
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-20 104.8 284 33.5
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.4e-20 104.8 117 49.6
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 2.5e-20 104.0 318 32.1
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 2.5e-20 104.0 340 33.2
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 4.2e-20 103.2 155 41.9
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 9.3e-20 102.1 288 33.3
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 9.3e-20 102.1 288 33.3
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 9.3e-20 102.1 154 42.2
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.2e-19 101.7 339 31.9
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.6e-19 101.3 133 45.1
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 4.6e-19 99.8 289 30.4
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 6.0e-19 99.4 113 47.8
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 6.0e-19 99.4 113 47.8
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 7.9e-19 99.0 113 47.8
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 7.9e-19 99.0 113 47.8
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 7.9e-19 99.0 113 47.8
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 1.0e-18 98.6 168 35.7
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.0e-18 98.6 130 41.5
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.0e-18 98.6 95 54.7
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.3e-18 98.2 113 49.6
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.8e-18 97.8 316 30.7
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 2.3e-18 97.4 125 47.2
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.3e-18 97.4 113 46.9
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 3.0e-18 97.1 144 42.4
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 3.0e-18 97.1 350 30.3
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.9e-18 96.7 121 44.6
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 3.9e-18 96.7 321 30.8
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 5.1e-18 96.3 310 30.3
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 6.7e-18 95.9 334 30.5
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 8.7e-18 95.5 114 43.0
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 1.1e-17 95.1 332 31.6
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.1e-17 95.1 331 30.2
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 1.9e-17 94.4 295 31.2
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.5e-17 94.0 312 33.7
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 3.3e-17 93.6 354 30.5
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.7e-17 92.8 344 30.5
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 7.4e-17 92.4 111 49.5
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.6e-16 91.3 337 30.6
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 2.2e-16 90.9 303 29.7
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.2e-16 90.9 344 29.9
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 2.8e-16 90.5 341 30.5
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 6.3e-16 89.4 122 41.8
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 8.2e-16 89.0 356 30.3
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.1e-15 88.6 97 51.5
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 1.4e-15 88.2 126 41.3
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.4e-15 88.2 113 46.0
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 3.1e-15 87.0 97 49.5
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 3.1e-15 87.0 87 51.7
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 3.1e-15 87.0 142 35.2
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 5.3e-15 86.3 170 38.2
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.2e-14 85.1 161 36.0
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 2.6e-14 84.0 95 48.4
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.6e-14 84.0 95 48.4
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 2.6e-14 84.0 95 48.4
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 3.4e-14 83.6 95 48.4
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 3.4e-14 83.6 95 48.4
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 5.9e-14 82.8 265 29.8
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 7.6e-14 82.4 89 47.2
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 1.7e-13 81.3 296 31.4
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.2e-13 80.9 265 30.2
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 2.5e-12 77.4 91 52.7
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 7.2e-12 75.9 93 46.2
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 9.3e-12 75.5 330 30.0
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 6.1e-11 72.8 99 42.4
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 6.1e-11 72.8 112 41.1
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.1e-09 68.6 92 44.6
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.5e-09 68.2 84 42.9
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 1.3e-08 65.1 91 39.6
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 7.7e-06 55.8 37 70.3


User provided reference genes

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