Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 6.8e-93 344.0 172 100.0
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 6.5e-27 124.8 179 46.9
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 5.5e-26 121.7 191 45.0
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 5.5e-26 121.7 191 45.0
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 6.1e-25 118.2 179 45.3
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.0e-24 117.5 180 44.4
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 3.3e-23 112.5 179 44.1
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.4e-21 107.1 185 42.7
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 6.9e-21 104.8 185 42.7
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 4.5e-20 102.1 178 39.3
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.3e-19 100.5 173 43.9
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 2.2e-19 99.8 184 39.1
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.5e-19 98.2 160 41.9
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.6e-17 93.6 150 42.0
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.6e-17 93.6 162 40.7
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.6e-17 93.6 199 37.2
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.7e-17 92.0 161 40.4
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.8e-16 90.1 162 40.7
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 5.1e-16 88.6 83 56.6
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 4.4e-15 85.5 160 40.0
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 9.7e-15 84.3 78 61.5
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.3e-14 84.0 178 36.5
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 1.7e-14 83.6 80 57.5
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.2e-14 83.2 150 37.3
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.2e-14 83.2 142 38.0
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 2.8e-14 82.8 153 38.6
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 8.2e-14 81.3 174 37.4
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.1e-13 80.9 161 35.4
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.4e-13 79.7 159 39.0
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 4.1e-13 79.0 162 35.8
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 6.9e-13 78.2 167 35.9
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 9.1e-13 77.8 163 36.8
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 9.1e-13 77.8 162 37.0
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.2e-12 77.4 185 35.7
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.2e-12 77.4 157 36.9
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.2e-12 77.4 76 52.6
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.5e-12 77.0 154 38.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 3.4e-12 75.9 144 34.7
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 5.9e-12 75.1 151 35.8
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 5.9e-12 75.1 178 36.5
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.0e-11 74.3 72 59.7
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.3e-11 73.9 77 58.4
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.9e-11 72.8 150 34.0
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.8e-11 72.4 171 36.8
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.8e-11 72.4 164 35.4
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 6.5e-11 71.6 172 37.2
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.5e-11 71.2 164 35.4
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.1e-10 70.9 76 53.9
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.1e-10 70.9 76 53.9
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.4e-10 70.5 153 38.6
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.4e-10 70.5 153 38.6
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.9e-10 70.1 76 50.0
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 5.5e-10 68.6 76 48.7
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.2e-10 68.2 76 47.4
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 7.2e-10 68.2 170 32.9
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 9.4e-10 67.8 156 37.2
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 2.1e-09 66.6 144 32.6
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 3.6e-09 65.9 74 50.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 4.7e-09 65.5 135 37.0
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 6.1e-09 65.1 139 37.4
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 6.1e-09 65.1 139 37.4
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 6.1e-09 65.1 157 35.7
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.4e-08 63.9 69 53.6
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.4e-08 63.9 69 53.6
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 1.8e-08 63.5 205 29.3
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.8e-08 63.5 154 33.8
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.3e-08 63.2 139 36.0
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 3.0e-08 62.8 83 48.2
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 3.9e-08 62.4 62 51.6
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 1.1e-07 60.8 71 52.1
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 1.5e-07 60.5 174 32.8
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 1.5e-07 60.5 144 33.3
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.5e-07 60.5 131 36.6
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 2.0e-07 60.1 151 31.8
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 2.6e-07 59.7 149 33.6
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 2.6e-07 59.7 174 31.6
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 2.6e-07 59.7 173 32.4
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 9.7e-07 57.8 170 32.4
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 2.8e-06 56.2 169 30.2
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 3.7e-06 55.8 144 35.4
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.8e-06 55.5 171 28.7
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 6.3e-06 55.1 178 29.8
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 6.3e-06 55.1 151 33.8


User provided reference genes

Program Settings