Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 5.5e-108 394.4 214 100.0
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.0e-57 226.5 213 64.3
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 3.4e-57 225.7 214 62.6
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 6.3e-56 221.5 214 61.7
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 1.0e-53 214.2 212 60.4
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 1.5e-52 210.3 214 59.3
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 5.7e-49 198.4 214 56.1
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.8e-47 193.4 198 59.6
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 3.6e-43 179.1 216 51.9
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 6.1e-43 178.3 216 52.8
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 1.0e-42 177.6 216 52.3
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 1.8e-42 176.8 214 53.3
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 1.2e-41 174.1 212 52.4
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 5.7e-41 171.8 212 52.8
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 7.5e-41 171.4 215 50.2
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 8.3e-40 167.9 213 51.2
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.4e-39 166.4 211 48.8
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 4.1e-39 165.6 211 49.3
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 4.1e-39 165.6 214 49.1
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 1.2e-38 164.1 212 49.5
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.7e-38 162.9 216 47.7
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 4.6e-38 162.2 212 49.5
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 5.9e-38 161.8 211 49.3
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 3.9e-37 159.1 214 48.6
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 8.6e-37 157.9 214 48.1
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 2.5e-36 156.4 213 48.4
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.5e-36 156.4 212 50.5
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 2.5e-36 156.4 214 46.7
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.5e-36 156.4 214 48.1
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.5e-36 156.4 214 48.1
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 2.5e-36 156.4 211 48.8
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 5.6e-36 155.2 212 50.0
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 4.7e-35 152.1 213 46.5
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 6.2e-35 151.8 218 46.8
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.0e-34 151.0 215 48.4
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 2.3e-34 149.8 202 50.5
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 3.1e-34 149.4 213 46.5
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.1e-34 149.4 212 44.3
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 4.0e-34 149.1 217 45.6
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 1.2e-33 147.5 217 47.0
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.5e-33 147.1 213 46.0
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 2.0e-33 146.7 212 46.2
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 3.4e-33 146.0 212 45.3
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 9.8e-33 144.4 216 44.9
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 9.8e-33 144.4 213 45.5
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 2.2e-32 143.3 208 47.1
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.9e-32 142.9 212 46.2
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 3.7e-32 142.5 212 45.8
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 4.9e-32 142.1 212 47.2
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.9e-31 140.2 217 44.7
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.4e-31 139.8 212 44.3
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 4.1e-31 139.0 203 47.3
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.2e-30 137.5 208 47.1
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 1.6e-30 137.1 211 43.6
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 2.0e-30 136.7 207 45.4
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 2.7e-30 136.3 215 45.6
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 3.5e-30 136.0 213 43.2
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 4.6e-30 135.6 202 47.0
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 6.0e-30 135.2 207 46.9
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 3.0e-29 132.9 213 41.8
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 3.0e-29 132.9 213 42.7
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 6.6e-29 131.7 214 44.9
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 1.5e-28 130.6 212 41.0
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 4.3e-28 129.0 209 45.5
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 5.6e-28 128.6 214 43.9
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 5.6e-28 128.6 214 41.1
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 9.5e-28 127.9 197 46.7
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 9.5e-28 127.9 197 46.7
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 9.5e-28 127.9 214 41.1
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 1.6e-27 127.1 197 47.7
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 1.6e-27 127.1 214 43.9
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.1e-27 126.7 214 43.9
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 4.7e-27 125.6 197 46.2
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 4.7e-27 125.6 213 40.4
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 4.7e-27 125.6 216 43.1
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 8.1e-27 124.8 216 40.3
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 8.1e-27 124.8 170 46.5
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.8e-26 123.6 213 43.7
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.8e-26 123.6 213 40.8
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 2.3e-26 123.2 214 42.5
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 2.3e-26 123.2 213 41.8
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 3.1e-26 122.9 213 39.9
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 3.1e-26 122.9 213 40.4
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 4.0e-26 122.5 197 45.2
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 4.0e-26 122.5 214 38.8
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 6.8e-26 121.7 213 39.9
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 8.9e-26 121.3 207 39.6
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 1.5e-25 120.6 190 45.8
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 2.0e-25 120.2 182 46.2
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 2.6e-25 119.8 219 38.8
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 2.6e-25 119.8 215 38.6
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 3.4e-25 119.4 214 39.3
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 3.4e-25 119.4 212 39.6
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 4.4e-25 119.0 216 39.4
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 5.8e-25 118.6 214 42.1
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 5.8e-25 118.6 213 42.3
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 7.5e-25 118.2 213 39.4
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 7.5e-25 118.2 195 45.6
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.7e-24 117.1 214 38.8
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 2.2e-24 116.7 213 39.0
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 2.2e-24 116.7 212 39.2
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.7e-24 115.9 213 39.0
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 4.9e-24 115.5 210 39.5
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.9e-23 113.6 211 40.8
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 2.4e-23 113.2 147 49.0
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 2.4e-23 113.2 213 40.8
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 3.2e-23 112.8 213 39.4
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 7.1e-23 111.7 214 38.8
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 7.1e-23 111.7 213 39.9
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 9.2e-23 111.3 214 36.9
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 9.2e-23 111.3 207 40.6
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 2.1e-22 110.2 212 38.7
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 2.1e-22 110.2 213 38.0
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.6e-22 109.0 215 40.0
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 4.6e-22 109.0 211 38.9
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 7.8e-22 108.2 201 39.3
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 7.8e-22 108.2 214 36.9
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 7.8e-22 108.2 211 37.9
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.7e-21 107.1 201 38.8
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 2.3e-21 106.7 216 38.4
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.3e-21 106.7 213 40.8
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 2.3e-21 106.7 207 40.1
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 5.1e-21 105.5 221 36.7
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 5.1e-21 105.5 210 40.0
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 5.1e-21 105.5 213 36.2
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 6.6e-21 105.1 218 37.2
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 8.6e-21 104.8 209 35.9
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.1e-20 104.4 172 42.4
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.5e-20 104.0 189 39.7
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.9e-20 103.6 203 37.9
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 2.5e-20 103.2 214 35.0
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 2.5e-20 103.2 207 39.6
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.5e-20 103.2 214 39.3
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 2.1e-19 100.1 218 34.9
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 1.8e-18 97.1 206 37.4
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 5.2e-18 95.5 212 34.9
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 5.2e-18 95.5 193 38.3
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 3.4e-17 92.8 210 37.6
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 5.8e-17 92.0 220 37.7
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 5.8e-17 92.0 211 35.5
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 2.9e-16 89.7 210 33.3
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 8.4e-16 88.2 222 33.8
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 1.9e-15 87.0 214 34.1
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 2.4e-15 86.7 137 46.0
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.7e-14 83.2 209 32.5
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 1.0e-13 81.3 120 45.0
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 3.6e-11 72.8 182 35.7
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.8e-10 70.5 200 33.0
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.2e-09 67.8 135 40.0
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 5.8e-09 65.5 117 41.0
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.6e-09 65.1 136 38.2
FAN28G2101 Fragaria x ananassa HOM05D004648 ORTHO05D005782 3.8e-08 62.8 52 57.7


User provided reference genes

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