Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0004916 Lotus japonicus HOM05D006531 ORTHO05D007905 0.0e+00 1140.6 555 100.0
Glyma.02G053000 Glycine max HOM05D006531 ORTHO05D007905 2.7e-207 725.7 569 67.0
TPR.G21544 Trifolium pratense HOM05D006531 ORTHO05D007905 1.7e-206 723.0 554 68.2
Psat4g096120 Pisum sativum HOM05D006531 ORTHO05D007905 1.1e-200 703.7 568 65.0
VMungo0251G0240 Vigna mungo HOM05D006531 ORTHO05D007905 1.4e-200 703.4 563 65.0
Ca_22340_v3 Cicer arietinum L. HOM05D006531 ORTHO05D007905 5.4e-200 701.4 570 64.9
Medtr8g076860 Medicago truncatula HOM05D006531 ORTHO05D007905 2.5e-197 692.6 568 64.4
Lalb_Chr16g0391021 Lupinus albus HOM05D006531 ORTHO05D007905 5.6e-197 691.4 581 62.7
arahy.Tifrunner.gnm1.ann1.P54VLQ Arachis hypogaea HOM05D006531 ORTHO05D007905 1.3e-185 653.7 576 60.8
arahy.Tifrunner.gnm1.ann1.WDDE23 Arachis hypogaea HOM05D006531 ORTHO05D007905 3.2e-184 649.0 576 60.6
Haze_03846 Corylus avellana HOM05D006531 ORTHO05D007905 9.1e-147 524.6 572 51.6
RcHm_v2.0_Chr2g0100811 Rosa chinensis HOM05D006531 ORTHO05D007905 1.9e-136 490.3 564 47.3
FAN26G0669 Fragaria x ananassa HOM05D006531 ORTHO05D007905 2.0e-133 480.3 584 47.9
Gohir.D11G188400 Gossypium hirsutum HOM05D006531 ORTHO05D007905 4.4e-133 479.2 584 46.2
QL06p035210 Quercus lobata HOM05D006531 ORTHO05D007905 4.4e-133 479.2 608 46.1
Gorai.007G200500 Gossypium raimondii HOM05D006531 ORTHO05D007905 2.2e-132 476.9 584 46.1
Ciclev10025250m.g Citrus clementina HOM05D006531 ORTHO05D007905 6.3e-132 475.3 576 46.2
Duzib187G1823 Durio zibethinus HOM05D006531 ORTHO05D007905 6.3e-132 475.3 584 47.3
Actinidia35619 Actinidia chinensis HOM05D006531 ORTHO05D007905 1.8e-131 473.8 582 46.9
Dinv05610 Davidia involucrata HOM05D006531 ORTHO05D007905 3.1e-131 473.0 550 48.5
FAN19G3073 Fragaria x ananassa HOM05D006531 ORTHO05D007905 5.3e-131 472.2 587 47.0
CANSAT21G1927 Cannabis sativa HOM05D006531 ORTHO05D007905 7.0e-131 471.9 571 45.7
TAR628G0973 Trochodendron aralioides HOM05D006531 ORTHO05D007905 1.2e-130 471.1 607 45.6
GSVIVG01018883001 Vitis vinifera HOM05D006531 ORTHO05D007905 1.2e-130 471.1 553 47.6
FvH4_1g12740 Fragaria vesca HOM05D006531 ORTHO05D007905 5.9e-130 468.8 588 46.8
FAN23G2909 Fragaria x ananassa HOM05D006531 ORTHO05D007905 7.7e-130 468.4 580 47.1
vmacro17801 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 1.3e-129 467.6 593 47.0
MD15G1254500 Malus domestica HOM05D006531 ORTHO05D007905 1.7e-129 467.2 567 47.3
Thecc.01G028000 Theobroma cacao HOM05D006531 ORTHO05D007905 2.2e-129 466.8 585 46.3
FAN28G0612 Fragaria x ananassa HOM05D006531 ORTHO05D007905 3.8e-129 466.1 571 47.3
Rhsim08G0121800 Rhododendron simsii HOM05D006531 ORTHO05D007905 4.7e-127 459.1 561 49.2
CsaV3_6G046680 Cucumis sativus L. HOM05D006531 ORTHO05D007905 6.1e-127 458.8 578 45.0
Prupe.7G159100 Prunus persica HOM05D006531 ORTHO05D007905 8.0e-127 458.4 537 47.5
Potri.007G019733 Populus trichocarpa HOM05D006531 ORTHO05D007905 1.4e-126 457.6 581 44.4
MELO3C007866.2 Cucumis melo HOM05D006531 ORTHO05D007905 4.0e-126 456.1 578 45.0
COL.COLO4_22012 Corchorus olitorius HOM05D006531 ORTHO05D007905 1.5e-125 454.1 578 45.7
Potri.007G019800 Populus trichocarpa HOM05D006531 ORTHO05D007905 7.5e-125 451.8 577 44.5
Atru.chr3.665 Acer truncatum HOM05D006531 ORTHO05D007905 2.8e-124 449.9 591 45.5
ClCG01G019940 Citrullus lanatus HOM05D006531 ORTHO05D008656 2.7e-122 443.4 604 42.7
Gohir.D11G322533 Gossypium hirsutum HOM05D006531 ORTHO05D007905 1.6e-119 434.1 576 44.8
Cpa.g.sc89.75 Carica papaya HOM05D006531 ORTHO05D007905 2.7e-119 433.3 585 43.2
TWI53G1729 Tripterygium wilfordii HOM05D006531 ORTHO05D007905 8.8e-118 428.3 574 45.6
Cc07_g10020 Coffea canephora HOM05D006531 ORTHO05D007905 2.0e-117 427.2 573 45.4
Eucgr.J02379 Eucalyptus grandis HOM05D006531 ORTHO05D007905 2.0e-117 427.2 558 44.3
Oeu056763.1 Olea europaea HOM05D006531 ORTHO05D007905 4.1e-115 419.5 582 44.7
Sabra07G0016900 Salix brachista HOM05D006531 ORTHO05D007905 9.1e-115 418.3 529 45.4
MSTRG.23258 Avicennia marina HOM05D006531 ORTHO05D007905 2.7e-114 416.8 576 42.5
DCAR_001553 Daucus carota HOM05D006531 ORTHO05D007905 7.7e-114 415.2 573 43.5
Aqoxy6G01185 Aquilegia oxysepala HOM05D006531 ORTHO05D007905 1.7e-113 414.1 606 40.6
Atru.BG.101.p Acer truncatum HOM05D006531 ORTHO05D007905 1.5e-112 411.0 553 44.8
PGR102G2490 Punica granatum HOM05D006531 ORTHO05D007905 1.9e-112 410.6 568 42.4
Sc07g0000880 Simmondsia chinensis HOM05D006531 ORTHO05D007905 2.5e-112 410.2 571 42.2
Migut.H02514 Erythranthe guttata HOM05D006531 ORTHO05D007905 7.2e-112 408.7 563 42.8
Hund14004 Selenicereus undatus HOM05D006531 ORTHO05D007905 2.8e-111 406.8 565 42.1
Sopen03g006510 Solanum pennellii HOM05D006531 ORTHO05D007905 2.0e-109 400.6 573 40.5
EL10As8g23896 Beta vulgaris HOM05D006531 ORTHO05D007905 4.4e-109 399.4 582 40.0
PSO675G3692 Papaver somniferum HOM05D006531 ORTHO05D007905 3.7e-108 396.4 593 39.6
AUR62007614 Chenopodium quinoa HOM05D006531 ORTHO05D007905 6.3e-108 395.6 579 41.5
THA.LOC104819768 Tarenaya hassleriana HOM05D006531 ORTHO05D007905 1.1e-107 394.8 567 42.9
Solyc03g033720.4 Solanum lycopersicum HOM05D006531 ORTHO05D007905 2.4e-107 393.7 573 39.8
AUR62004101 Chenopodium quinoa HOM05D006531 ORTHO05D007905 3.1e-107 393.3 584 41.6
Thhalv10003992m.g Eutrema salsugineum HOM05D006531 ORTHO05D007905 3.1e-107 393.3 581 40.8
PGSC0003DMG400022568 Solanum tuberosum HOM05D006531 ORTHO05D007905 9.2e-107 391.7 576 39.6
CARHR147820 Cardamine hirsuta HOM05D006531 ORTHO05D007905 1.6e-106 391.0 561 42.1
CiPaw.07G051400 Carya illinoinensis HOM05D006531 ORTHO05D007905 1.6e-106 391.0 419 50.1
AT3G26750 Arabidopsis thaliana HOM05D006531 ORTHO05D007905 1.3e-105 387.9 570 40.9
CAN.G753.1 Capsicum annuum HOM05D006531 ORTHO05D007905 5.0e-105 386.0 573 39.4
Ah.03g141200 Amaranthus hybridus HOM05D006531 ORTHO05D007905 8.6e-105 385.2 576 40.6
PSO541G5850 Papaver somniferum HOM05D006531 ORTHO05D007905 1.9e-104 384.0 590 39.2
SalBow8G4669 Salvia bowleyana HOM05D006531 ORTHO05D007905 1.9e-104 384.0 571 40.8
AL5G15610 Arabidopsis lyrata HOM05D006531 ORTHO05D007905 8.0e-103 378.6 558 41.0
A06p41760 Brassica napus HOM05D006531 ORTHO05D007905 3.0e-102 376.7 565 40.9
BraA06t27096Z Brassica rapa HOM05D006531 ORTHO05D007905 3.0e-102 376.7 565 40.9
Lsat_1_v5_gn_4_151921 Lactuca sativa HOM05D006531 ORTHO05D007905 1.2e-101 374.8 566 40.3
BolC7t44097H Brassica oleracea HOM05D006531 ORTHO05D007905 1.3e-100 371.3 558 41.2
BcaC06g31044 Brassica carinata HOM05D006531 ORTHO05D007905 2.2e-100 370.5 558 41.2
Phvul.003G257232 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 2.2e-100 370.5 240 72.9
BcaC06g33892 Brassica carinata HOM05D006531 ORTHO05D007905 2.9e-100 370.2 554 41.0
C07p35780 Brassica napus HOM05D006531 ORTHO05D007905 8.3e-100 368.6 558 40.9
Lj2C458T7 Lonicera japonica HOM05D006531 ORTHO05D007905 1.6e-98 364.4 453 45.7
Aa31LG2G5790 Aethionema arabicum HOM05D006531 ORTHO05D007905 2.0e-98 364.0 556 39.7
Nitab4.5_0011360g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 2.0e-98 364.0 582 38.1
ECA232G0312 Erigeron canadensis HOM05D006531 ORTHO05D007905 2.7e-98 363.6 557 40.8
Sp2g15880 Schrenkiella parvula HOM05D006531 ORTHO05D007905 3.5e-98 363.2 566 40.3
Nitab4.5_0001289g0010 Nicotiana tabacum HOM05D006531 ORTHO05D007905 6.2e-95 352.4 616 36.7
CDE04G2389 Ceratophyllum demersum HOM05D006531 ORTHO05D007905 5.2e-94 349.4 599 38.6
Gohir.A11G181766 Gossypium hirsutum HOM05D006531 ORTHO05D007905 6.8e-94 349.0 412 45.6
Peaxi162Scf00010g00816 Petunia axillaris HOM05D006531 ORTHO05D007905 3.4e-93 346.7 552 37.9
Os02g0130900 Oryza sativa ssp. japonica HOM05D006531 ORTHO05D007905 1.1e-91 341.7 577 36.6
HanXRQChr09g0261281 Helianthus annuus HOM05D006531 ORTHO05D007905 4.1e-91 339.7 569 38.1
Manes.02G098000 Manihot esculenta HOM05D006531 ORTHO05D007905 5.4e-91 339.3 419 44.6
Carub.0005s0479 Capsella rubella HOM05D006531 ORTHO05D007905 3.5e-90 336.7 438 43.2
Sed0004808 Sechium edule HOM05D006531 ORTHO05D007905 3.5e-90 336.7 417 45.1
ATR0585G072 Amborella trichopoda HOM05D006531 ORTHO05D007905 7.3e-88 328.9 580 35.0
SGA_v2.0_scaffold12G06335 Striga asiatica HOM05D006531 ORTHO05D007905 2.1e-87 327.4 405 43.2
unitig_0.g471 Utricularia gibba HOM05D006531 ORTHO05D007905 3.6e-87 326.6 553 36.9
MBI16_g36847_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 3.1e-86 323.6 446 42.8
Phvul.003G257166 Phaseolus vulgaris HOM05D006531 ORTHO05D007905 5.8e-85 319.3 255 66.7
HPP92_011628 Vanilla planifolia HOM05D006531 ORTHO05D007905 3.0e-81 307.0 504 38.9
Hma1.2p1_3019F.1_g331750 Hydrangea macrophylla HOM05D006531 ORTHO05D007905 1.5e-80 304.7 362 44.5
Lj2g0008134 Lotus japonicus HOM05D006531 ORTHO05D007905 1.3e-68 265.0 143 93.0
Mapoly0011s0081 Marchantia polymorpha HOM05D006531 ORTHO05D007905 2.1e-55 221.1 639 28.5
MBI14_g29302_MAGBIO Magnolia biondii HOM05D006531 ORTHO05D007905 6.0e-50 203.0 186 53.8
Zm00001eb209020 Zea mays HOM05D006531 ORTHO05D007905 3.0e-49 200.7 504 29.6
Pp3c2_6980 Physcomitrium patens HOM05D006531 ORTHO05D007905 1.5e-45 188.3 602 28.6
CSS0007477 Camellia sinensis var. sinensis HOM05D006531 ORTHO05D007905 5.3e-38 163.3 134 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1148 Anthoceros agrestis HOM05D006531 ORTHO05D007905 4.5e-37 160.2 441 25.4
TAR376G0004 Trochodendron aralioides HOM05D006531 ORTHO05D007905 5.1e-33 146.7 140 53.6
vmacro23089 Vaccinium macrocarpon HOM05D006531 ORTHO05D007905 3.1e-30 137.5 131 53.4
Nn5g29702 Nelumbo nucifera HOM05D006531 ORTHO05D007905 1.2e-29 135.6 140 47.9
Zm00001eb231290 Zea mays HOM05D006531 ORTHO05D007905 2.6e-29 134.4 189 37.6
SEGI_05601 Sequoiadendron giganteum HOM05D006531 ORTHO05D007905 2.3e-25 121.3 354 27.1
Carub.0006s2991 Capsella rubella HOM05D006531 ORTHO05D007905 1.1e-24 119.0 114 48.2
Sc07g0000850 Simmondsia chinensis HOM05D006531 ORTHO05D007905 4.1e-14 84.0 74 51.4
CBR_g8866 Chara braunii HOM05D006531 ORTHO05D007905 6.5e-12 76.6 79 39.2
TAR376G0395 Trochodendron aralioides HOM05D006531 ORTHO05D007905 2.1e-10 71.6 118 44.1
RcHm_v2.0_Chr4g0390451 Rosa chinensis HOM05D006531 ORTHO05D007905 1.1e-06 59.3 42 59.5
MSTRG.2488 Avicennia marina HOM05D006531 ORTHO05D007905 1.4e-06 58.9 75 44.0
Medtr3g062350 Medicago truncatula HOM05D006531 ORTHO05D007905 2.4e-06 58.2 33 75.8


User provided reference genes

Program Settings