Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 0.0e+00 1274.2 650 100.0
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 2.0e-238 829.3 724 64.8
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 6.3e-232 807.7 726 63.8
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 1.7e-229 799.7 705 64.7
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 1.1e-228 797.0 675 67.1
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 7.2e-228 794.3 729 62.7
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.8e-226 789.6 678 65.5
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 2.7e-219 765.8 697 62.7
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 5.9e-214 748.0 631 66.4
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 8.5e-213 744.2 825 54.7
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 4.7e-203 711.8 488 75.0
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 8.0e-179 631.3 740 52.6
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 4.4e-177 625.5 788 48.7
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 3.2e-175 619.4 796 48.6
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 1.9e-172 610.1 810 48.3
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.5e-169 600.5 888 45.3
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 2.9e-168 596.3 776 48.3
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 6.4e-168 595.1 776 49.0
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 8.3e-168 594.7 873 44.1
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 4.6e-166 589.0 752 47.9
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 7.8e-166 588.2 809 47.0
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 8.6e-165 584.7 716 51.7
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 3.6e-163 579.3 420 70.0
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 3.1e-162 576.2 873 43.4
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 3.1e-162 576.2 757 47.7
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 6.4e-160 568.5 551 58.6
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 3.5e-158 562.8 848 47.5
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.7e-157 560.5 757 48.0
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 2.3e-157 560.1 582 55.8
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 2.3e-157 560.1 794 44.2
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.1e-156 557.8 764 47.9
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 1.5e-156 557.4 570 56.7
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 1.2e-155 554.3 426 68.1
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.4e-154 550.8 591 54.8
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 2.4e-154 550.1 582 55.2
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 3.1e-154 549.7 814 44.5
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 5.3e-154 548.9 761 46.1
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 2.0e-153 547.0 596 54.0
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 2.6e-153 546.6 673 52.0
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 7.6e-153 545.0 872 43.8
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.2e-152 543.5 808 45.4
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 3.8e-152 542.7 645 50.4
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 2.4e-151 540.0 785 44.5
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 3.2e-151 539.7 818 44.3
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 4.2e-151 539.3 656 50.3
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 5.4e-151 538.9 650 49.7
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 9.3e-151 538.1 420 66.0
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 2.1e-150 537.0 731 47.3
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 3.5e-150 536.2 410 68.0
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 6.0e-150 535.4 808 44.9
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 6.6e-149 531.9 614 52.3
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 3.6e-147 526.2 930 40.4
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 6.2e-147 525.4 625 51.4
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 1.1e-146 524.6 506 56.9
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 1.4e-146 524.2 765 44.2
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 2.4e-146 523.5 728 47.0
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 4.0e-146 522.7 977 40.0
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 1.7e-144 517.3 747 45.4
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 6.4e-144 515.4 579 53.5
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 3.2e-143 513.1 642 49.2
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 9.3e-143 511.5 762 44.2
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 1.2e-142 511.1 519 56.5
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 4.6e-142 509.2 863 41.5
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 6.0e-142 508.8 674 47.5
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 1.0e-141 508.1 784 43.8
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 5.1e-141 505.8 698 48.3
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 1.9e-140 503.8 896 40.2
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 2.5e-140 503.4 616 50.8
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 9.6e-140 501.5 424 61.3
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 1.3e-139 501.1 456 58.3
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 2.8e-139 500.0 866 41.0
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.4e-138 496.9 763 45.1
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 9.0e-138 495.0 706 44.9
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 9.0e-138 495.0 718 45.3
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 1.0e-136 491.5 554 50.5
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 6.4e-136 488.8 434 60.4
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 8.4e-136 488.4 535 55.1
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 1.9e-135 487.3 759 42.7
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 3.2e-135 486.5 738 44.4
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 7.4e-132 475.3 705 45.1
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 3.7e-131 473.0 525 54.3
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 3.1e-130 469.9 703 44.5
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 5.3e-130 469.2 699 43.9
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 1.5e-129 467.6 863 39.5
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 1.5e-129 467.6 410 59.8
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 1.0e-128 464.9 691 45.2
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 2.3e-125 453.8 657 46.6
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 6.7e-125 452.2 715 43.6
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 8.7e-125 451.8 585 49.1
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 7.4e-124 448.7 850 39.2
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 9.7e-124 448.4 398 59.5
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 8.2e-123 445.3 431 56.1
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 1.1e-122 444.9 694 43.9
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 2.4e-122 443.7 695 44.0
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 2.6e-121 440.3 749 40.6
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 7.7e-121 438.7 746 40.5
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 6.7e-117 425.6 722 42.2
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 2.9e-112 410.2 412 55.3
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 7.4e-108 395.6 708 43.2
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 4.8e-99 366.3 410 52.9
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 2.6e-97 360.5 797 35.3
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 4.5e-97 359.8 372 54.6
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 2.8e-83 313.9 472 42.8
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 1.3e-75 288.5 620 37.1
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 2.7e-73 280.8 288 55.9
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 1.2e-44 185.7 111 79.3
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 3.9e-40 170.6 550 31.5
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 3.3e-39 167.5 211 44.1
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 5.8e-36 156.8 167 51.5
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 1.0e-32 146.0 108 66.7
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 5.3e-21 107.1 81 64.2
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 2.6e-20 104.8 89 62.9
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 3.3e-15 87.8 83 56.6
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.8e-13 82.0 132 41.7
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 1.3e-11 75.9 79 50.6


User provided reference genes

Program Settings