Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 0.0e+00 1604.3 802 100.0
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 0.0e+00 1277.3 802 79.7
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 0.0e+00 1266.5 803 78.6
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 0.0e+00 1256.1 803 78.1
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 0.0e+00 1247.3 803 77.0
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 0.0e+00 1245.0 802 76.7
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 0.0e+00 1212.2 802 75.7
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1211.1 803 76.0
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 0.0e+00 1200.3 801 74.4
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1182.2 806 74.9
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 0.0e+00 1181.4 806 74.4
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 0.0e+00 1170.2 807 74.5
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 5.5e-312 1074.7 809 66.3
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 5.5e-312 1074.7 810 66.9
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.7e-308 1062.4 809 65.6
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 1.8e-305 1052.4 812 65.4
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.3e-303 1046.2 814 64.9
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 2.1e-301 1038.9 808 65.0
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 3.9e-300 1034.6 810 64.3
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 1.1e-299 1033.1 819 64.0
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 1.1e-299 1033.1 813 64.3
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 2.5e-299 1031.9 805 65.6
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 3.3e-299 1031.6 815 64.0
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 5.6e-299 1030.8 807 64.4
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 5.6e-299 1030.8 804 65.4
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 6.2e-298 1027.3 813 63.8
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 1.1e-297 1026.5 813 63.8
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 4.0e-297 1024.6 813 64.1
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.2e-296 1023.1 808 63.5
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 5.8e-296 1020.8 813 63.5
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 5.8e-296 1020.8 812 64.0
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 3.2e-294 1015.0 805 64.6
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.2e-293 1013.1 806 64.5
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 3.5e-293 1011.5 820 62.8
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 4.6e-293 1011.1 814 62.3
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 2.0e-288 995.7 874 59.0
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.4e-288 995.0 816 61.6
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.4e-288 995.0 816 61.6
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 3.4e-288 995.0 812 62.6
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 4.5e-288 994.6 815 62.5
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 2.2e-287 992.3 811 61.8
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 3.8e-287 991.5 811 61.2
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 1.4e-286 989.6 815 61.1
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 1.9e-286 989.2 784 64.0
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 1.9e-286 989.2 810 61.7
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.4e-286 988.8 868 59.9
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 5.5e-286 987.6 812 60.8
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 6.7e-284 980.7 810 60.6
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 7.4e-283 977.2 810 60.7
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 1.4e-278 963.0 806 60.2
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 5.5e-278 961.1 811 59.9
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 6.0e-277 957.6 809 60.6
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 3.0e-276 955.3 810 60.1
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 8.7e-276 953.7 804 60.0
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 1.9e-275 952.6 817 59.5
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 9.7e-275 950.3 815 59.4
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.6e-274 949.5 817 59.4
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 1.5e-272 943.0 819 59.5
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.5e-272 943.0 805 58.5
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.0e-272 942.6 818 59.5
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 3.4e-272 941.8 813 58.4
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 5.9e-272 941.0 814 59.0
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 3.8e-271 938.3 834 59.4
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 8.5e-271 937.2 816 58.9
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 3.2e-270 935.3 816 58.8
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 3.2e-270 935.3 851 57.6
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 5.5e-270 934.5 823 59.2
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 5.5e-270 934.5 808 58.2
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 7.2e-270 934.1 816 58.8
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.2e-269 933.3 816 58.7
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.1e-269 932.6 824 58.6
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 2.7e-269 932.2 812 58.7
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 3.6e-269 931.8 807 59.2
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 4.3e-267 924.9 808 56.9
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 9.7e-267 923.7 808 58.8
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 3.4e-264 915.2 811 58.6
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.7e-263 912.9 804 58.6
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 6.5e-263 911.0 810 57.4
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.2e-261 906.7 832 57.8
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.8e-260 902.9 816 58.1
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 3.0e-260 902.1 813 58.8
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 2.0e-259 899.4 823 57.0
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 2.4e-257 892.5 811 58.0
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.8e-249 866.3 822 56.0
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 5.9e-248 861.3 815 55.1
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 3.6e-245 852.0 805 55.0
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.6e-240 836.6 811 55.4
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.7e-239 833.2 804 53.4
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 6.3e-234 814.7 801 53.1
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 7.0e-233 811.2 811 52.2
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.3e-231 807.0 824 53.2
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.6e-229 800.0 579 68.4
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.4e-228 797.0 809 52.2
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 3.0e-228 795.8 806 51.6
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 5.7e-227 791.6 810 52.1
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 1.9e-222 776.5 748 54.9
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 7.3e-222 774.6 628 59.2
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 1.1e-209 734.2 804 47.9
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 6.2e-205 718.4 880 46.6
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 6.2e-197 691.8 536 62.3
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 2.1e-181 640.2 812 45.0
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.4e-180 637.5 819 43.0
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.7e-176 623.2 814 44.3
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 7.4e-174 615.1 847 43.3
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 9.3e-161 571.6 815 42.8
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 4.1e-156 556.2 460 60.2
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.2e-152 544.7 846 37.7
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 5.3e-148 529.3 579 49.2
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.1e-145 521.5 805 41.1
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 2.3e-143 513.8 683 44.5
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 9.7e-142 508.4 824 38.0
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 1.4e-140 504.6 847 37.1
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.5e-137 494.6 472 57.2
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 1.2e-136 491.5 813 40.8
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 3.7e-125 453.4 815 38.3
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 2.0e-123 447.6 841 35.3
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 3.8e-114 416.8 337 60.5
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 8.1e-96 355.9 423 47.5
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 2.0e-94 351.3 745 31.5
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 8.9e-79 299.3 405 42.7
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.6e-64 251.9 273 50.9
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 3.6e-64 250.8 274 50.7
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 4.0e-63 247.3 274 50.4
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 2.0e-62 245.0 743 28.4
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 3.5e-59 234.2 156 71.8
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 1.3e-53 215.7 203 57.1
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 2.9e-53 214.5 200 57.0
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 2.9e-45 188.0 846 24.0
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 6.5e-37 160.2 136 61.0
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.8e-34 152.1 147 52.4
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 7.4e-33 146.7 463 30.0
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 6.3e-32 143.7 130 56.9
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 7.2e-28 130.2 127 48.8
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 2.0e-22 112.1 92 62.0
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 2.2e-16 92.0 105 48.6
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 3.1e-15 88.2 105 47.6
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 7.0e-15 87.0 61 65.6
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 9.1e-15 86.7 63 68.3
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 7.7e-14 83.6 46 84.8
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.3e-13 82.8 46 84.8
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 7.2e-12 77.0 65 55.4
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.7e-11 75.1 95 42.1
arahy.Tifrunner.gnm1.ann1.NVD3GI Arachis hypogaea HOM05D001215 ORTHO05D001387 2.0e-09 68.9 62 58.1
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 2.0e-09 68.9 116 41.4
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 7.5e-09 67.0 44 72.7
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.7e-08 65.9 83 44.6
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 4.5e-06 57.8 37 73.0
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 4.5e-06 57.8 37 73.0
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 4.5e-06 57.8 37 73.0
Lsat_1_v5_gn_4_117360 Lactuca sativa HOM05D004893 ORTHO05D006320 7.7e-06 57.0 82 45.1


User provided reference genes

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