Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 7.5e-30 133.3 71 100.0
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.0e-18 96.3 58 87.9
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.5e-17 92.4 59 83.1
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 1.2e-16 89.4 69 72.5
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 1.6e-16 89.0 59 81.4
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.6e-16 89.0 70 70.0
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 3.6e-16 87.8 58 77.6
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 4.7e-16 87.4 66 69.7
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 1.4e-15 85.9 58 79.3
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.8e-15 85.5 60 75.0
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 2.3e-15 85.1 64 71.9
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 2.6e-14 81.6 66 69.7
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 4.4e-14 80.9 64 67.2
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 4.4e-14 80.9 64 70.3
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 5.8e-14 80.5 58 72.4
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 7.5e-14 80.1 71 62.0
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 9.9e-14 79.7 66 65.2
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 1.3e-13 79.3 64 65.6
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 1.3e-13 79.3 52 78.8
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 1.7e-13 79.0 64 68.8
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 3.7e-13 77.8 66 66.7
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 4.9e-13 77.4 66 63.6
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 6.4e-13 77.0 64 70.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 6.4e-13 77.0 61 65.6
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 6.4e-13 77.0 58 70.7
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 6.4e-13 77.0 58 70.7
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 6.4e-13 77.0 64 60.9
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 8.3e-13 76.6 55 70.9
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 8.3e-13 76.6 55 70.9
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 8.3e-13 76.6 55 70.9
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 1.1e-12 76.3 64 64.1
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 1.1e-12 76.3 54 74.1
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 1.1e-12 76.3 56 73.2
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.4e-12 75.9 59 72.9
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 1.9e-12 75.5 65 63.1
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 1.9e-12 75.5 56 66.1
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 2.4e-12 75.1 61 62.3
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 2.4e-12 75.1 64 71.9
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 3.2e-12 74.7 59 72.9
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 4.1e-12 74.3 63 61.9
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.1e-12 74.3 55 70.9
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 5.4e-12 73.9 61 62.3
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 5.4e-12 73.9 59 74.6
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 9.2e-12 73.2 58 65.5
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 9.2e-12 73.2 59 66.1
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 9.2e-12 73.2 66 65.2
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.2e-11 72.8 61 60.7
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.6e-11 72.4 54 66.7
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 1.6e-11 72.4 64 59.4
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 2.7e-11 71.6 61 68.9
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 4.6e-11 70.9 62 62.9
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.6e-11 70.9 56 64.3
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 4.6e-11 70.9 58 63.8
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 6.0e-11 70.5 59 62.7
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 6.0e-11 70.5 60 68.3
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 1.0e-10 69.7 52 65.4
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.3e-10 69.3 53 71.7
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 1.3e-10 69.3 54 59.3
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 1.3e-10 69.3 54 61.1
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 1.7e-10 68.9 55 65.5
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 1.7e-10 68.9 55 65.5
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.7e-10 68.9 56 62.5
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.7e-10 68.9 68 58.8
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 2.3e-10 68.6 66 60.6
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 2.3e-10 68.6 72 56.9
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 3.0e-10 68.2 56 66.1
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 3.9e-10 67.8 48 70.8
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 3.9e-10 67.8 64 56.2
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 3.9e-10 67.8 58 62.1
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 5.1e-10 67.4 59 61.0
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 5.1e-10 67.4 63 61.9
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 5.1e-10 67.4 48 68.8
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 6.6e-10 67.0 56 66.1
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 6.6e-10 67.0 55 63.6
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 6.6e-10 67.0 56 66.1
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 6.6e-10 67.0 55 63.6
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 6.6e-10 67.0 54 57.4
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 6.6e-10 67.0 58 63.8
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 8.6e-10 66.6 50 68.0
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 1.5e-09 65.9 64 56.2
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 1.5e-09 65.9 61 63.9
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.9e-09 65.5 57 59.6
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 2.5e-09 65.1 56 64.3
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 2.5e-09 65.1 56 64.3
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 3.3e-09 64.7 63 55.6
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 3.3e-09 64.7 56 62.5
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 4.3e-09 64.3 52 67.3
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 4.3e-09 64.3 52 63.5
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 7.3e-09 63.5 66 56.1
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 7.3e-09 63.5 54 61.1
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.6e-08 62.4 42 71.4
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 2.8e-08 61.6 56 58.9
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 8.1e-08 60.1 58 55.2
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 1.1e-07 59.7 64 57.8
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 2.4e-07 58.5 71 45.1
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 2.4e-07 58.5 55 58.2
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 2.4e-07 58.5 54 57.4
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 5.2e-07 57.4 59 49.2
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 6.8e-07 57.0 54 57.4
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 1.2e-06 56.2 66 45.5
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 1.2e-06 56.2 72 47.2
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 1.5e-06 55.8 65 49.2
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.5e-06 55.8 59 47.5
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.5e-06 55.8 59 47.5
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 1.5e-06 55.8 48 56.2
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 1.5e-06 55.8 49 51.0
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 2.0e-06 55.5 68 45.6
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.0e-06 55.5 58 46.6
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 2.0e-06 55.5 53 52.8
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 2.6e-06 55.1 60 48.3
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 2.6e-06 55.1 66 45.5
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.4e-06 54.7 70 44.3
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 3.4e-06 54.7 65 46.2
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 4.4e-06 54.3 48 56.2
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 4.4e-06 54.3 66 43.9
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 4.4e-06 54.3 54 48.1
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 4.4e-06 54.3 58 51.7
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 5.8e-06 53.9 58 48.3
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 5.8e-06 53.9 48 54.2
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 5.8e-06 53.9 48 54.2
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 5.8e-06 53.9 54 50.0
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 5.8e-06 53.9 52 50.0
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 5.8e-06 53.9 60 46.7
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 9.9e-06 53.1 57 50.9


User provided reference genes

Program Settings