Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 4.9e-219 764.2 401 100.0
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 1.4e-181 639.8 405 83.7
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 6.9e-181 637.5 405 83.7
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 3.4e-180 635.2 405 82.5
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 1.8e-176 622.9 411 80.8
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 1.5e-175 619.8 404 79.7
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 2.5e-175 619.0 404 80.0
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 9.7e-175 617.1 411 80.0
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 2.6e-172 609.0 411 79.1
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 8.8e-168 594.0 416 76.7
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 3.8e-163 578.6 405 74.3
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 4.2e-162 575.1 406 73.2
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 4.2e-162 575.1 388 79.1
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 2.0e-156 556.2 399 70.9
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 4.7e-153 545.0 400 72.5
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 5.2e-152 541.6 401 71.1
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 2.6e-151 539.3 401 71.3
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 4.4e-151 538.5 405 70.6
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 1.4e-149 533.5 405 69.6
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 5.4e-149 531.6 402 70.1
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 1.7e-147 526.6 408 69.6
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 8.5e-147 524.2 405 69.4
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 2.5e-146 522.7 401 68.6
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 7.2e-146 521.2 411 68.1
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.6e-145 518.8 403 69.2
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 3.0e-144 515.8 438 64.8
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 5.2e-144 515.0 404 68.8
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 2.6e-143 512.7 394 68.0
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 3.4e-143 512.3 400 68.0
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.8e-142 509.2 403 69.0
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 1.4e-141 506.9 407 66.8
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 4.1e-141 505.4 391 68.5
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 5.4e-141 505.0 405 67.4
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 3.5e-140 502.3 382 69.9
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 3.5e-140 502.3 434 65.0
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 1.3e-139 500.4 407 65.1
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.3e-139 500.4 390 67.7
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 3.8e-139 498.8 403 68.0
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 4.3e-138 495.4 400 65.2
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 5.6e-138 495.0 370 70.5
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 8.0e-137 491.1 356 73.0
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 1.8e-136 490.0 389 68.9
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 1.2e-135 487.3 394 65.7
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 1.5e-135 486.9 390 66.4
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 4.4e-135 485.3 397 63.5
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 7.5e-135 484.6 384 66.4
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.1e-133 480.7 418 63.4
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.1e-133 480.7 418 63.4
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 1.8e-133 479.9 395 64.1
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 1.3e-131 473.8 391 66.5
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 6.6e-131 471.5 387 65.6
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 8.6e-131 471.1 392 63.0
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.1e-130 470.7 397 64.5
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 2.5e-130 469.5 412 62.9
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 3.3e-130 469.2 389 64.5
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 3.3e-130 469.2 397 62.7
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 9.5e-130 467.6 393 63.9
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.6e-129 466.8 392 62.5
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 2.1e-129 466.5 410 63.4
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 6.2e-129 464.9 410 62.0
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 2.3e-128 463.0 401 61.8
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 5.2e-128 461.8 410 62.2
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 8.9e-128 461.1 405 63.2
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 3.4e-127 459.1 395 62.0
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 3.4e-127 459.1 395 63.0
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 3.4e-127 459.1 391 62.7
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 3.7e-126 455.7 474 57.8
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 1.1e-125 454.1 395 61.3
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 1.1e-125 454.1 395 61.3
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 3.2e-125 452.6 396 61.1
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 3.2e-125 452.6 393 61.1
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 4.1e-125 452.2 398 63.3
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 7.0e-125 451.4 395 60.5
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 7.0e-125 451.4 359 68.2
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 2.0e-124 449.9 403 61.8
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 4.6e-124 448.7 394 61.2
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 4.6e-124 448.7 400 62.2
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 1.7e-123 446.8 390 64.6
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 1.7e-123 446.8 395 61.0
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 3.0e-123 446.0 368 66.3
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 3.9e-123 445.7 395 60.0
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 3.9e-123 445.7 395 60.0
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 5.0e-123 445.3 391 61.1
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 8.6e-123 444.5 386 63.2
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 1.5e-122 443.7 347 68.0
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 1.5e-122 443.7 399 59.6
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 1.9e-122 443.4 397 60.5
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 2.5e-122 443.0 389 60.9
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 3.3e-122 442.6 386 63.0
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 7.3e-122 441.4 396 60.1
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 9.5e-122 441.0 365 66.0
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 2.1e-121 439.9 355 67.9
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 6.8e-120 434.9 396 58.8
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 8.9e-120 434.5 385 63.1
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 4.3e-114 415.6 345 65.8
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 3.6e-113 412.5 389 57.6
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.4e-112 410.6 310 71.0
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 1.3e-110 404.1 369 59.1
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 1.7e-107 393.7 388 56.7
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 3.1e-104 382.9 420 52.9
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 6.6e-99 365.2 434 49.1
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.4e-85 320.1 257 68.5
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 5.3e-80 302.4 308 54.9
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.1e-77 294.7 338 48.5
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 5.1e-75 285.8 406 44.6
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 4.3e-74 282.7 400 44.2
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 4.3e-74 282.7 400 44.2
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 1.5e-71 274.2 383 44.1
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 3.0e-67 260.0 157 83.4
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 7.5e-42 175.6 126 68.3
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 1.6e-39 167.9 126 68.3
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 8.8e-35 152.1 385 33.5
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 9.1e-32 142.1 141 52.5
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 3.5e-31 140.2 329 32.8
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 1.7e-22 111.3 87 65.5
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 3.2e-16 90.5 187 34.2
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 7.0e-16 89.4 141 40.4
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 2.7e-15 87.4 52 71.2
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 2.3e-11 74.3 52 65.4
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 2.3e-11 74.3 52 65.4
Cfa027053 Carpinus fangiana HOM05D006541 ORTHO05D124901 9.8e-10 68.9 363 25.9
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 4.9e-09 66.6 102 47.1
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 1.1e-08 65.5 62 58.1
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 7.8e-07 59.3 100 46.0
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 8.6e-06 55.8 48 56.2


User provided reference genes

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