Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0004264 Lotus japonicus HOM05D000003 ORTHO05D000007 6.2e-171 604.0 295 100.0
TPR.G16044 Trifolium pratense HOM05D000003 ORTHO05D000007 2.2e-19 100.5 171 36.3
TPR.G17626 Trifolium pratense HOM05D000003 ORTHO05D000007 2.2e-19 100.5 200 33.5
TPR.G23327 Trifolium pratense HOM05D000737 ORTHO05D000581 2.9e-19 100.1 254 32.3
TPR.G18895 Trifolium pratense HOM05D000003 ORTHO05D000007 1.5e-18 97.8 182 34.6
Sabra15G0018300 Salix brachista HOM05D013820 ORTHO05D000007 3.2e-18 96.7 177 36.7
Sabra15G0020800 Salix brachista HOM05D013820 ORTHO05D000007 9.4e-18 95.1 176 35.2
Lj5g0014385 Lotus japonicus HOM05D000003 ORTHO05D000007 1.2e-17 94.7 206 33.5
TPR.G14601 Trifolium pratense HOM05D000003 ORTHO05D000007 1.2e-17 94.7 191 35.6
TPR.G15942 Trifolium pratense HOM05D000003 ORTHO05D000007 2.1e-17 94.0 61 60.7
TPR.G17627 Trifolium pratense HOM05D000003 ORTHO05D000007 2.7e-17 93.6 93 48.4
TPR.G24275 Trifolium pratense HOM05D000003 ORTHO05D000007 3.6e-17 93.2 167 35.3
TPR.G39703 Trifolium pratense HOM05D000003 ORTHO05D000007 4.7e-17 92.8 105 41.9
TPR.G18288 Trifolium pratense HOM05D000003 ORTHO05D000006 1.0e-16 91.7 167 35.3
TPR.G4588 Trifolium pratense HOM05D061595 ORTHO05D000007 1.8e-16 90.9 168 36.3
TPR.G11139 Trifolium pratense HOM05D000003 ORTHO05D000007 5.2e-16 89.4 69 56.5
TPR.G29398 Trifolium pratense HOM05D000003 ORTHO05D000007 1.5e-15 87.8 73 54.8
Lj3g0001406 Lotus japonicus HOM05D000003 ORTHO05D000007 2.6e-15 87.0 61 59.0
TPR.G20742 Trifolium pratense HOM05D000003 ORTHO05D000007 7.5e-15 85.5 61 59.0
LjContig00029g0014189 Lotus japonicus HOM05D000003 ORTHO05D000006 1.3e-14 84.7 112 39.3
TPR.G319 Trifolium pratense HOM05D000003 ORTHO05D000007 2.8e-14 83.6 76 48.7
TPR.G14379 Trifolium pratense HOM05D000003 ORTHO05D000007 1.8e-13 80.9 93 39.8
TPR.G24718 Trifolium pratense HOM05D000003 ORTHO05D000007 5.3e-13 79.3 61 49.2
Phvul.001G235200 Phaseolus vulgaris HOM05D000003 ORTHO05D000007 7.0e-13 79.0 57 56.1
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 1.6e-12 77.8 135 32.6
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.7e-12 77.0 298 25.2
TPR.G31733 Trifolium pratense HOM05D000003 ORTHO05D000007 1.0e-11 75.1 112 37.5
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.2e-11 73.9 160 33.1
Sabra06G0138800 Salix brachista HOM05D000003 ORTHO05D000007 5.0e-11 72.8 137 32.8
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.5e-11 72.4 160 33.1
Prupe.7G019600 Prunus persica HOM05D000003 ORTHO05D000007 6.5e-11 72.4 61 44.3
EL10Ac3g06843 Beta vulgaris HOM05D000003 ORTHO05D000007 1.5e-10 71.2 167 29.3
Dinv30689 Davidia involucrata HOM05D000003 ORTHO05D000007 1.5e-10 71.2 69 46.4
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 1.5e-10 71.2 163 31.3
TPR.G32099 Trifolium pratense HOM05D000003 ORTHO05D000007 1.9e-10 70.9 76 42.1
TPR.G35802 Trifolium pratense HOM05D000003 ORTHO05D000007 1.9e-10 70.9 90 41.1
Lj1g0024982 Lotus japonicus HOM05D000003 ORTHO05D000007 3.2e-10 70.1 232 28.4
Medtr6g037050 Medicago truncatula HOM05D000003 ORTHO05D000007 3.2e-10 70.1 236 24.6
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 4.2e-10 69.7 140 34.3
TPR.G22161 Trifolium pratense HOM05D000003 ORTHO05D000007 4.2e-10 69.7 86 37.2
TPR.G34138 Trifolium pratense HOM05D000003 ORTHO05D000007 5.5e-10 69.3 305 26.9
TPR.G511 Trifolium pratense HOM05D000003 ORTHO05D000007 5.5e-10 69.3 78 43.6
Sabra08G0135000 Salix brachista HOM05D000003 ORTHO05D000007 9.4e-10 68.6 140 31.4
TPR.G39739 Trifolium pratense HOM05D000003 ORTHO05D000007 9.4e-10 68.6 78 39.7
TPR.G28232 Trifolium pratense HOM05D000003 ORTHO05D000007 1.6e-09 67.8 176 32.4
Thecc.03G216200 Theobroma cacao HOM05D000003 ORTHO05D000006 4.7e-09 66.2 80 40.0
TPR.G23335 Trifolium pratense HOM05D000003 ORTHO05D000007 6.1e-09 65.9 76 39.5
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 6.1e-09 65.9 93 40.9
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.1e-09 65.9 164 27.4
PGR067G0007 Punica granatum HOM05D000003 ORTHO05D000007 8.0e-09 65.5 80 38.8
AUR62034456 Chenopodium quinoa HOM05D000091 ORTHO05D001510 1.0e-08 65.1 99 37.4
Prupe.4G246900 Prunus persica HOM05D000003 ORTHO05D000007 1.0e-08 65.1 86 39.5
Rhsim07G0171700 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.0e-08 65.1 305 24.9
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-08 64.7 62 45.2
Atru.chr9.1215 Acer truncatum HOM05D000003 ORTHO05D000006 1.4e-08 64.7 62 41.9
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-08 64.3 164 28.7
Psat0s4034g0080 Pisum sativum HOM05D000003 ORTHO05D000004 1.8e-08 64.3 61 41.0
Prupe.2G044900 Prunus persica HOM05D000003 ORTHO05D000007 2.3e-08 63.9 80 40.0
Psat7g109680 Pisum sativum HOM05D003775 ORTHO05D004314 3.0e-08 63.5 65 38.5
Sabra15G0091800 Salix brachista HOM05D000003 ORTHO05D000007 4.0e-08 63.2 257 26.1
TPR.G29549 Trifolium pratense HOM05D000003 ORTHO05D000007 4.0e-08 63.2 61 41.0
TPR.G30519 Trifolium pratense HOM05D000003 ORTHO05D000007 4.0e-08 63.2 61 47.5
Gorai.003G132500 Gossypium raimondii HOM05D000003 ORTHO05D000007 5.2e-08 62.8 90 37.8
Lj1g0011911 Lotus japonicus HOM05D000003 ORTHO05D000007 5.2e-08 62.8 182 30.2
Prupe.1G231200 Prunus persica HOM05D000003 ORTHO05D000007 5.2e-08 62.8 61 42.6
QL04p016008 Quercus lobata HOM05D017375 ORTHO05D000007 5.2e-08 62.8 92 35.9
Gorai.009G311100 Gossypium raimondii HOM05D000003 ORTHO05D000007 6.8e-08 62.4 80 42.5
Psat5g160400 Pisum sativum HOM05D000003 ORTHO05D000007 6.8e-08 62.4 63 38.1
Psat6g044400 Pisum sativum HOM05D000003 ORTHO05D000007 6.8e-08 62.4 77 37.7
QL04p016548 Quercus lobata HOM05D017375 ORTHO05D000007 8.8e-08 62.0 89 34.8
RcHm_v2.0_Chr3g0492931 Rosa chinensis HOM05D000003 ORTHO05D000007 8.8e-08 62.0 72 43.1
Atru.chr12.2519 Acer truncatum HOM05D000003 ORTHO05D000007 1.2e-07 61.6 62 45.2
Atru.chr6.753 Acer truncatum HOM05D000003 ORTHO05D000007 1.2e-07 61.6 62 41.9
PGR119G1894 Punica granatum HOM05D000003 ORTHO05D000007 1.5e-07 61.2 157 30.6
TPR.G22534 Trifolium pratense HOM05D000003 ORTHO05D000007 1.5e-07 61.2 93 34.4
Atru.chr4.174 Acer truncatum HOM05D000003 ORTHO05D000007 2.0e-07 60.8 78 38.5
BcaB06g27222 Brassica carinata HOM05D000003 ORTHO05D000007 2.0e-07 60.8 111 36.0
QL04p016515 Quercus lobata HOM05D017375 ORTHO05D000007 2.0e-07 60.8 160 28.1
Atru.chr7.1602 Acer truncatum HOM05D000003 ORTHO05D000007 2.6e-07 60.5 70 40.0
EL10Ac6g13602 Beta vulgaris HOM05D000003 ORTHO05D000007 2.6e-07 60.5 178 27.5
Lj3g0023340 Lotus japonicus HOM05D000003 ORTHO05D000007 2.6e-07 60.5 169 27.2
Psat5g114840 Pisum sativum HOM05D000003 ORTHO05D000006 2.6e-07 60.5 62 37.1
QL03p025414 Quercus lobata HOM05D000003 ORTHO05D000007 2.6e-07 60.5 163 31.3
THA.LOC104799464 Tarenaya hassleriana HOM05D000003 ORTHO05D000007 2.6e-07 60.5 117 32.5
Atru.chr2.1276 Acer truncatum HOM05D000003 ORTHO05D000007 3.4e-07 60.1 62 40.3
AUR62042607 Chenopodium quinoa HOM05D002059 ORTHO05D000007 3.4e-07 60.1 65 35.4
Lj4g0026510 Lotus japonicus HOM05D000003 ORTHO05D000007 3.4e-07 60.1 169 26.6
Lj5g0003428 Lotus japonicus HOM05D000003 ORTHO05D000007 3.4e-07 60.1 195 30.8
Psat5g038720 Pisum sativum HOM05D000003 ORTHO05D000007 3.4e-07 60.1 56 42.9
Prupe.1G055400 Prunus persica HOM05D000003 ORTHO05D000007 3.4e-07 60.1 157 28.0
arahy.Tifrunner.gnm1.ann1.244SBX Arachis hypogaea HOM05D000003 ORTHO05D000007 4.4e-07 59.7 73 39.7
Cpa.g.c33197.1 Carica papaya HOM05D000003 ORTHO05D000007 4.4e-07 59.7 60 45.0
RcHm_v2.0_Chr2g0171821 Rosa chinensis HOM05D000003 ORTHO05D000007 4.4e-07 59.7 141 26.2
AT2G01050 Arabidopsis thaliana HOM05D000003 ORTHO05D000007 5.7e-07 59.3 61 44.3
COL.COLO4_12097 Corchorus olitorius HOM05D000003 ORTHO05D000007 5.7e-07 59.3 183 24.0
Lj4g0003656 Lotus japonicus HOM05D000003 ORTHO05D000007 5.7e-07 59.3 165 28.5
Prupe.1G179200 Prunus persica HOM05D000003 ORTHO05D000007 5.7e-07 59.3 142 29.6
RcHm_v2.0_Chr2g0146151 Rosa chinensis HOM05D000003 ORTHO05D000006 5.7e-07 59.3 159 28.9
Atru.chr10.1301 Acer truncatum HOM05D000003 ORTHO05D000006 7.5e-07 58.9 62 41.9
Atru.chr4.106 Acer truncatum HOM05D000003 ORTHO05D000007 7.5e-07 58.9 62 38.7
EL10Ac5g10755 Beta vulgaris HOM05D000003 ORTHO05D000007 7.5e-07 58.9 164 25.6
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.5e-07 58.9 136 30.9
CARHR101000 Cardamine hirsuta HOM05D000003 ORTHO05D000007 7.5e-07 58.9 61 45.9
PSO339G4387 Papaver somniferum HOM05D000003 ORTHO05D000007 7.5e-07 58.9 90 31.1
Psat0ss5882g0080 Pisum sativum HOM05D000003 ORTHO05D000007 7.5e-07 58.9 82 34.1
Psat4g006520 Pisum sativum HOM05D000003 ORTHO05D000006 7.5e-07 58.9 56 39.3
Cpa.g.sc16.67 Carica papaya HOM05D000003 ORTHO05D000007 9.8e-07 58.5 76 36.8
Lj2g0019281 Lotus japonicus HOM05D000003 ORTHO05D000007 9.8e-07 58.5 66 45.5
Hund01136 Selenicereus undatus HOM05D011981 ORTHO05D000007 9.8e-07 58.5 98 37.8
Atru.chr9.654 Acer truncatum HOM05D000003 ORTHO05D000007 1.3e-06 58.2 62 41.9
Lj3g0021978 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-06 58.2 64 45.3
BcaC08g42832 Brassica carinata HOM05D000003 ORTHO05D000007 1.7e-06 57.8 114 29.8
Cpa.g.c33378.2 Carica papaya HOM05D000003 ORTHO05D000007 1.7e-06 57.8 105 34.3
Cpa.g.sc203.9 Carica papaya HOM05D009428 ORTHO05D000007 1.7e-06 57.8 136 32.4
Gorai.010G180600 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.7e-06 57.8 96 34.4
LjContig00141g0023727 Lotus japonicus HOM05D013113 ORTHO05D000007 1.7e-06 57.8 155 29.7
PSO017G5897 Papaver somniferum HOM05D000003 ORTHO05D000007 1.7e-06 57.8 135 26.7
QL11p054864 Quercus lobata HOM05D000003 ORTHO05D000007 1.7e-06 57.8 260 26.5
Atru.chr7.666 Acer truncatum HOM05D000003 ORTHO05D000007 2.2e-06 57.4 61 41.0
Lj2g0006651 Lotus japonicus HOM05D000003 ORTHO05D000007 2.2e-06 57.4 54 40.7
Lj6g0003171 Lotus japonicus HOM05D000003 ORTHO05D000007 2.2e-06 57.4 224 25.4
Prupe.2G055100 Prunus persica HOM05D000003 ORTHO05D000007 2.2e-06 57.4 61 41.0
BcaB06g26466 Brassica carinata HOM05D000003 ORTHO05D000007 2.8e-06 57.0 92 34.8
BcaC09g49796 Brassica carinata HOM05D000003 ORTHO05D000007 2.8e-06 57.0 186 27.4
Lj6g0027241 Lotus japonicus HOM05D000473 ORTHO05D000007 2.8e-06 57.0 167 26.9
QL08p065182 Quercus lobata HOM05D000003 ORTHO05D000007 2.8e-06 57.0 135 26.7
QL09p023087 Quercus lobata HOM05D000003 ORTHO05D000007 2.8e-06 57.0 139 28.1
Atru.chr11.84 Acer truncatum HOM05D000003 ORTHO05D000007 3.7e-06 56.6 62 38.7
Atru.chr9.873 Acer truncatum HOM05D000003 ORTHO05D000007 3.7e-06 56.6 81 35.8
BcaC01g03606 Brassica carinata HOM05D000003 ORTHO05D000007 3.7e-06 56.6 61 44.3
Hma1.2p1_0773F.1_g216200 Hydrangea macrophylla HOM05D000003 ORTHO05D000007 3.7e-06 56.6 134 29.1
Prupe.2G097600 Prunus persica HOM05D000003 ORTHO05D000007 3.7e-06 56.6 75 37.3
C03p14460 Brassica napus HOM05D000003 ORTHO05D000007 4.8e-06 56.2 73 35.6
Lj3g0026450 Lotus japonicus HOM05D000003 ORTHO05D000007 4.8e-06 56.2 159 30.2
PGR004G0997 Punica granatum HOM05D000003 ORTHO05D000007 4.8e-06 56.2 164 26.8
Atru.chr11.754 Acer truncatum HOM05D000003 ORTHO05D000007 6.3e-06 55.8 62 38.7
BcaC06g35660 Brassica carinata HOM05D000003 ORTHO05D000007 6.3e-06 55.8 61 41.0
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.3e-06 55.8 219 25.6
Lj3g0011245 Lotus japonicus HOM05D000003 ORTHO05D000007 6.3e-06 55.8 174 28.7
Lj4g0016016 Lotus japonicus HOM05D000003 ORTHO05D000007 6.3e-06 55.8 155 27.7
QL01p027762 Quercus lobata HOM05D000003 ORTHO05D000006 6.3e-06 55.8 221 24.9
QL01p027824 Quercus lobata HOM05D000003 ORTHO05D000006 6.3e-06 55.8 221 24.9
BcaC01g02605 Brassica carinata HOM05D000003 ORTHO05D000007 8.3e-06 55.5 74 37.8
Lj3g0003480 Lotus japonicus HOM05D000003 ORTHO05D000007 8.3e-06 55.5 100 32.0
Lj5g0009117 Lotus japonicus HOM05D000003 ORTHO05D029824 8.3e-06 55.5 108 31.5
Lj6g0020901 Lotus japonicus HOM05D000003 ORTHO05D000007 8.3e-06 55.5 84 33.3


User provided reference genes

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