Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 8.1e-167 590.5 336 100.0
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 5.3e-118 428.3 339 75.8
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 2.7e-114 416.0 335 70.4
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 3.4e-112 409.1 337 69.4
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 4.4e-112 408.7 335 66.6
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 3.7e-111 405.6 329 73.6
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 6.3e-111 404.8 334 63.5
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 1.4e-102 377.1 352 59.9
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 7.8e-101 371.3 332 66.9
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 6.6e-100 368.2 334 65.9
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.5e-99 367.1 331 65.3
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.9e-99 366.7 334 66.8
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.5e-99 366.3 331 65.0
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 2.1e-98 363.2 333 64.3
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 2.1e-98 363.2 331 63.4
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 2.8e-98 362.8 334 64.4
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 1.0e-97 360.9 334 64.1
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 2.3e-97 359.8 334 64.1
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 4.0e-97 359.0 344 62.8
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 5.8e-96 355.1 327 66.1
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 7.5e-96 354.8 336 65.2
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 3.7e-95 352.4 335 63.0
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 4.1e-94 349.0 332 63.0
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 2.7e-93 346.3 334 61.7
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 2.7e-93 346.3 335 62.7
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 3.5e-93 345.9 334 62.0
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 3.5e-93 345.9 324 61.7
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 4.6e-93 345.5 331 61.9
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 1.3e-92 344.0 329 62.3
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 2.3e-92 343.2 333 60.7
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 2.3e-92 343.2 335 62.4
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 3.0e-92 342.8 333 59.5
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 3.0e-92 342.8 335 54.9
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 5.0e-92 342.0 333 59.2
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 1.1e-91 340.9 331 64.0
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 1.9e-91 340.1 341 61.0
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 3.3e-91 339.3 322 64.0
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 7.3e-91 338.2 327 63.6
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 1.2e-90 337.4 325 60.9
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 1.2e-90 337.4 325 62.2
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 1.6e-90 337.0 348 60.3
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 2.1e-90 336.7 336 56.0
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 3.6e-90 335.9 332 61.7
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 6.2e-90 335.1 335 60.9
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 6.2e-90 335.1 332 62.7
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 3.1e-89 332.8 329 59.9
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 4.0e-89 332.4 339 58.4
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 6.8e-89 331.6 334 60.5
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 5.8e-88 328.6 334 60.5
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 9.8e-88 327.8 323 60.4
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 9.8e-88 327.8 329 62.0
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 1.3e-87 327.4 342 60.5
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 2.2e-87 326.6 326 58.9
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 2.9e-87 326.2 342 53.5
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 3.7e-87 325.9 337 53.1
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 6.4e-87 325.1 333 60.1
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 2.7e-85 319.7 334 55.7
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 1.0e-84 317.8 329 54.1
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 1.0e-84 317.8 326 61.7
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 1.7e-84 317.0 332 58.4
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 3.9e-84 315.8 323 52.0
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 3.9e-84 315.8 324 59.6
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 6.6e-84 315.1 329 53.8
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 6.6e-84 315.1 330 57.3
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 1.1e-83 314.3 326 50.9
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 2.5e-83 313.2 337 56.4
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 2.5e-83 313.2 337 56.4
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 5.6e-83 312.0 340 57.6
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 5.6e-83 312.0 329 56.5
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 7.3e-83 311.6 329 56.2
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 7.3e-83 311.6 329 56.2
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 1.2e-82 310.8 336 50.6
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 6.2e-82 308.5 329 55.9
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.1e-81 307.8 337 58.2
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 1.8e-81 307.0 343 51.3
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 4.0e-81 305.8 328 58.8
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 2.6e-80 303.1 400 45.2
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 5.8e-80 302.0 335 48.7
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 2.1e-77 293.5 336 50.3
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 3.5e-77 292.7 335 56.1
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 6.6e-76 288.5 337 57.6
GSVIVG01013285001 Vitis vinifera HOM05D006103 ORTHO05D007468 7.3e-75 285.0 195 71.8
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 2.1e-74 283.5 351 55.6
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 8.1e-74 281.6 322 47.5
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 1.8e-73 280.4 338 51.5
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 3.1e-73 279.6 333 55.0
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 2.0e-72 276.9 304 53.0
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 3.4e-72 276.2 328 47.9
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 3.4e-72 276.2 328 47.9
Dinv28889 Davidia involucrata HOM05D006103 ORTHO05D007468 8.4e-71 271.6 194 67.5
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 3.2e-70 269.6 293 59.7
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 7.1e-70 268.5 278 59.0
Sc22g0001160 Simmondsia chinensis HOM05D006103 ORTHO05D007468 1.0e-68 264.6 198 65.2
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 1.1e-67 261.2 275 58.5
CANSAT21G0160 Cannabis sativa HOM05D001479 ORTHO05D007468 3.3e-67 259.6 183 68.9
CANSAT21G1035 Cannabis sativa HOM05D006103 ORTHO05D007468 3.3e-67 259.6 183 68.9
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 1.4e-65 254.2 329 51.7
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 1.8e-65 253.8 278 52.9
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 3.1e-65 253.1 325 53.2
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 5.3e-65 252.3 330 48.8
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 1.6e-61 240.7 250 62.0
HPP92_014398 Vanilla planifolia HOM05D006103 ORTHO05D007468 4.0e-57 226.1 192 57.3
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 2.0e-56 223.8 224 61.6
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 8.7e-52 208.4 341 45.2
BolC8t50609H Brassica oleracea HOM05D006103 ORTHO05D007468 4.5e-48 196.1 169 60.4
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 1.6e-45 187.6 222 45.9
AagrBONN_evm.TU.Sc2ySwM_368.2081 Anthoceros agrestis HOM05D006103 ORTHO05D007468 3.0e-44 183.3 322 41.9
C08p30000 Brassica napus HOM05D006103 ORTHO05D007468 6.2e-42 175.6 140 62.9
Lj8A284T15 Lonicera japonica HOM05D006103 ORTHO05D007468 4.5e-40 169.5 137 58.4
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 1.0e-39 168.3 330 38.8
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 1.9e-38 164.1 427 34.2
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 6.3e-26 122.5 172 54.1
SHI06573 Sapria himalayana HOM05D006103 ORTHO05D007468 1.5e-24 117.9 122 50.8
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 1.0e-23 115.2 352 28.7
Actinidia02205 Actinidia chinensis HOM05D006103 ORTHO05D007468 8.5e-23 112.1 69 76.8
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 9.4e-22 108.6 207 36.7
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 2.1e-21 107.5 84 60.7
Lj8A284T12 Lonicera japonica HOM05D006103 ORTHO05D007468 2.6e-19 100.5 133 44.4
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 2.0e-16 90.9 71 62.0
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 2.0e-16 90.9 54 81.5
SHI06574 Sapria himalayana HOM05D006103 ORTHO05D007468 2.5e-14 84.0 166 33.1
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 5.5e-14 82.8 55 63.6
Cre03.g170100 Chlamydomonas reinhardtii HOM05D006103 ORTHO05D007468 2.1e-13 80.9 142 39.4
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 5.2e-12 76.3 50 74.0
Actinidia25920 Actinidia chinensis HOM05D006103 ORTHO05D007468 1.5e-11 74.7 79 51.9
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 2.6e-11 73.9 56 64.3
arahy.Tifrunner.gnm1.ann1.NKK7HF Arachis hypogaea HOM05D006103 ORTHO05D007468 1.4e-09 68.2 35 88.6
Lj8A280T20 Lonicera japonica HOM05D006103 ORTHO05D007468 9.1e-09 65.5 40 80.0
Rhsim04G0176300 Rhododendron simsii HOM05D006103 ORTHO05D007468 3.5e-08 63.5 58 55.2
Ah.07g199910 Amaranthus hybridus HOM05D006103 ORTHO05D007468 7.2e-06 55.8 51 56.9


User provided reference genes

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