Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 2338.9 1180 100.0
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1971.4 1190 84.7
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1926.8 1191 82.5
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1926.0 1188 82.7
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1917.5 1208 81.9
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1916.4 1190 82.4
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1910.6 1193 82.9
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1893.2 1187 81.4
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1879.4 1183 81.0
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1870.1 1187 80.7
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1769.6 1187 75.4
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1767.3 1187 75.1
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1555.8 1191 65.7
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1537.3 1203 65.5
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1532.7 1176 64.6
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1531.2 1192 65.0
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1528.1 1207 64.3
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1524.2 1194 65.1
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1516.5 1196 64.6
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1505.3 1188 63.4
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1503.4 1200 62.8
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1496.9 1194 63.6
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1494.2 1204 63.5
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1493.0 1171 63.3
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1490.7 1199 62.9
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1487.6 1196 62.5
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1483.0 1199 62.7
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1479.2 1192 62.8
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1474.9 1176 63.1
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1469.1 1188 62.5
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1468.8 1188 62.6
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1461.4 1194 62.1
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1461.0 1188 62.3
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1457.6 1200 62.8
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1449.1 1189 61.9
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1446.8 1174 62.4
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1442.9 1189 61.6
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1442.2 1187 61.7
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1441.8 1181 61.6
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1441.8 1188 62.0
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1440.6 1180 63.0
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1439.5 1188 61.4
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1438.7 1173 61.9
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1437.6 1187 61.5
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1436.8 1198 61.4
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1436.8 1181 61.5
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1436.4 1181 61.0
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1427.9 1173 61.4
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1424.1 1184 61.6
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1421.8 1190 60.8
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1416.7 1190 61.7
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1409.8 1188 58.8
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1400.2 1187 60.4
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1398.3 1188 60.1
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1397.5 1210 59.5
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1394.8 1101 64.9
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1390.6 1195 60.0
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1387.5 1190 60.1
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1381.7 1190 59.0
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1380.9 1077 63.6
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1367.4 1193 59.3
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1358.6 1196 58.7
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 1358.6 1187 59.0
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1357.4 1175 58.1
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 1357.0 1194 58.4
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1356.7 1188 58.4
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 1356.3 1193 59.1
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 1353.6 1188 58.7
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1352.8 1187 58.3
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 1344.7 1192 58.2
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1342.4 1173 58.8
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 1330.5 1192 57.8
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1328.5 1175 57.3
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1327.4 1182 58.7
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1326.2 1034 64.6
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1322.0 1222 55.8
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1308.5 1187 57.5
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1299.3 1308 52.9
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1287.3 1196 56.5
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1285.8 1186 56.8
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1271.9 1185 56.7
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1269.6 1033 61.8
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1263.4 1073 60.2
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1252.3 1175 55.6
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1251.9 1184 55.1
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1250.7 1181 53.6
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1223.0 1187 53.8
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1208.0 1046 59.3
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1204.1 1183 54.2
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1187.6 1035 58.5
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1175.6 1205 51.0
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 0.0e+00 1174.8 1195 54.3
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 0.0e+00 1079.3 1227 48.2
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 6.1e-310 1067.8 1040 54.8
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 2.3e-264 916.4 762 60.5
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 7.1e-250 868.2 1207 42.5
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 4.9e-243 845.5 742 59.3
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 3.9e-232 809.3 1195 40.5
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 1.1e-231 807.7 837 52.0
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 2.5e-231 806.6 1204 39.9
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 3.4e-228 796.2 694 58.9
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 1.4e-216 757.7 730 55.2
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 1.7e-214 750.7 717 53.1
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 3.4e-212 743.0 698 54.6
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 1.3e-182 644.8 516 62.8
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 9.8e-175 618.6 772 46.0
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 3.3e-170 603.6 787 43.1
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 1.3e-158 565.1 454 60.8
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 4.6e-148 530.0 1348 30.0
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 6.8e-144 516.2 439 57.6
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 4.9e-126 456.8 442 55.7
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 3.3e-122 444.1 450 51.1
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 8.2e-113 412.9 430 49.5
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 2.9e-102 377.9 686 34.3
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 7.9e-92 343.2 366 51.1
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 4.8e-73 280.8 311 46.9
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 1.8e-72 278.9 353 50.1
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 1.3e-57 229.6 1262 23.6
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 4.6e-55 221.1 226 50.0
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 1.5e-42 179.5 168 56.5
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 8.9e-35 153.7 118 62.7
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 1.1e-32 146.7 137 55.5
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.9e-32 146.0 388 30.7
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 3.0e-30 138.7 130 52.3
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 1.6e-15 89.7 1184 20.1
Medtr4g115410 Medicago truncatula HOM05D005976 ORTHO05D007149 8.1e-12 77.4 56 73.2
Medtr3g103480 Medicago truncatula HOM05D005976 ORTHO05D007149 3.4e-10 72.0 56 67.9


User provided reference genes

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