Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0003733 Lotus japonicus HOM05D002156 ORTHO05D002328 6.9e-56 220.3 105 100.0
Lj5g0019951 Lotus japonicus HOM05D002156 ORTHO05D002328 5.3e-24 114.4 93 67.7
Lj2g0015820 Lotus japonicus HOM05D002156 ORTHO05D002328 7.7e-23 110.5 140 50.7
arahy.Tifrunner.gnm1.ann1.DXU8TV Arachis hypogaea HOM05D002156 ORTHO05D002328 3.0e-19 98.6 140 45.7
arahy.Tifrunner.gnm1.ann1.WVVG4E Arachis hypogaea HOM05D002156 ORTHO05D002328 3.0e-19 98.6 144 44.4
Psat2g171800 Pisum sativum HOM05D002156 ORTHO05D002328 8.8e-19 97.1 140 43.6
Ca_24680_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 1.5e-18 96.3 140 43.6
Lalb_Chr05g0213751 Lupinus albus HOM05D002156 ORTHO05D002328 2.0e-18 95.9 140 45.0
Medtr5g015280 Medicago truncatula HOM05D002156 ORTHO05D002328 9.8e-18 93.6 140 42.1
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.4e-16 89.0 140 41.4
Glyma.11G047000 Glycine max HOM05D002156 ORTHO05D002328 3.1e-16 88.6 140 42.1
VMungo1215G2868 Vigna mungo HOM05D002156 ORTHO05D002328 3.1e-16 88.6 140 41.4
Phvul.002G010100 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 4.1e-16 88.2 140 42.1
TPR.G9332 Trifolium pratense HOM05D002156 ORTHO05D002328 5.4e-16 87.8 105 49.5
CANSAT80G2770 Cannabis sativa HOM05D002156 ORTHO05D002328 2.0e-15 85.9 66 62.1
CiPaw.02G001800 Carya illinoinensis HOM05D002156 ORTHO05D002328 3.5e-15 85.1 145 38.6
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 3.5e-15 85.1 140 38.6
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 4.5e-15 84.7 140 39.3
Glyma.01G194800 Glycine max HOM05D002156 ORTHO05D002328 4.5e-15 84.7 126 42.9
Prupe.6G219400 Prunus persica HOM05D002156 ORTHO05D002328 6.5e-14 80.9 140 38.6
CAN.G775.6 Capsicum annuum HOM05D002156 ORTHO05D002328 8.5e-14 80.5 65 60.0
Sed0011684 Sechium edule HOM05D002156 ORTHO05D002328 8.5e-14 80.5 59 66.1
Sc07g0000520 Simmondsia chinensis HOM05D002156 ORTHO05D002328 8.5e-14 80.5 101 45.5
Atru.chr3.1024 Acer truncatum HOM05D002156 ORTHO05D002328 1.1e-13 80.1 144 36.8
Haze_15273 Corylus avellana HOM05D002156 ORTHO05D002328 2.5e-13 79.0 133 38.3
PGSC0003DMG400003330 Solanum tuberosum HOM05D002156 ORTHO05D002328 4.2e-13 78.2 65 56.9
CsaV3_3G032390 Cucumis sativus L. HOM05D002156 ORTHO05D002328 5.5e-13 77.8 59 61.0
Solyc02g064580.3 Solanum lycopersicum HOM05D002156 ORTHO05D002328 5.5e-13 77.8 65 55.4
MD15G1298300 Malus domestica HOM05D002156 ORTHO05D002328 7.2e-13 77.4 59 61.0
Dinv26941 Davidia involucrata HOM05D002156 ORTHO05D002328 9.5e-13 77.0 101 44.6
Manes.12G115600 Manihot esculenta HOM05D002156 ORTHO05D002328 9.5e-13 77.0 105 44.8
ECA234G4580 Erigeron canadensis HOM05D002156 ORTHO05D002328 1.2e-12 76.6 65 55.4
Lj7A108T18 Lonicera japonica HOM05D002156 ORTHO05D002328 1.2e-12 76.6 103 43.7
Actinidia34534 Actinidia chinensis HOM05D002156 ORTHO05D002328 2.1e-12 75.9 59 62.7
CSS0028846 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 2.7e-12 75.5 59 61.0
Nn5g30618 Nelumbo nucifera HOM05D002156 ORTHO05D002328 2.7e-12 75.5 64 57.8
TWI74G0945 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 2.7e-12 75.5 144 36.8
Migut.H00340 Erythranthe guttata HOM05D002156 ORTHO05D002328 3.6e-12 75.1 59 59.3
RcHm_v2.0_Chr2g0108281 Rosa chinensis HOM05D002156 ORTHO05D002328 3.6e-12 75.1 59 59.3
RcHm_v2.0_Chr5g0059801 Rosa chinensis HOM05D002156 ORTHO05D002328 3.6e-12 75.1 59 61.0
vmacro05417 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 3.6e-12 75.1 62 54.8
Eucgr.H02313 Eucalyptus grandis HOM05D002156 ORTHO05D002328 4.7e-12 74.7 140 36.4
Sopen02g014710 Solanum pennellii HOM05D002156 ORTHO05D002328 4.7e-12 74.7 65 53.8
THA.LOC104821209 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 4.7e-12 74.7 140 35.7
FvH4_1g17850 Fragaria vesca HOM05D002156 ORTHO05D002328 1.0e-11 73.6 59 57.6
FAN19G2206 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.0e-11 73.6 59 57.6
FAN28G1601 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.0e-11 73.6 59 57.6
CANSAT80G2385 Cannabis sativa HOM05D002156 ORTHO05D002328 1.4e-11 73.2 62 58.1
COL.COLO4_11588 Corchorus olitorius HOM05D002156 ORTHO05D002328 1.4e-11 73.2 101 43.6
FAN26G1599 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.4e-11 73.2 59 57.6
HanXRQChr10g0293211 Helianthus annuus HOM05D002156 ORTHO05D002328 1.4e-11 73.2 65 55.4
Lsat_1_v5_gn_5_106741 Lactuca sativa HOM05D002156 ORTHO05D002328 1.8e-11 72.8 53 66.0
Potri.007G005500 Populus trichocarpa HOM05D002156 ORTHO05D002328 1.8e-11 72.8 109 42.2
Ciclev10025460m.g Citrus clementina HOM05D002156 ORTHO05D002328 2.3e-11 72.4 140 35.7
MELO3C023949.2 Cucumis melo HOM05D002156 ORTHO05D002328 2.3e-11 72.4 59 57.6
Gohir.A12G077600 Gossypium hirsutum HOM05D002156 ORTHO05D002328 2.3e-11 72.4 67 53.7
Duzib147G1396 Durio zibethinus HOM05D002156 ORTHO05D002328 4.0e-11 71.6 101 41.6
FAN23G2052 Fragaria x ananassa HOM05D002156 ORTHO05D002328 4.0e-11 71.6 59 55.9
Cpa.g.sc6.5 Carica papaya HOM05D002156 ORTHO05D002328 5.2e-11 71.2 101 42.6
Dinv04039 Davidia involucrata HOM05D002156 ORTHO05D002328 5.2e-11 71.2 101 42.6
Cc07_g07180 Coffea canephora HOM05D002156 ORTHO05D002328 6.8e-11 70.9 59 57.6
Sabra07G0004000 Salix brachista HOM05D002156 ORTHO05D002328 6.8e-11 70.9 106 44.3
Peaxi162Scf00449g00322 Petunia axillaris HOM05D002156 ORTHO05D002328 8.8e-11 70.5 63 55.6
SGA_v2.0_scaffold15G07468 Striga asiatica HOM05D002156 ORTHO05D002328 1.5e-10 69.7 59 57.6
TAR381G0066 Trochodendron aralioides HOM05D002156 ORTHO05D002328 1.5e-10 69.7 50 62.0
Sp2g29040 Schrenkiella parvula HOM05D002156 ORTHO05D002328 2.0e-10 69.3 139 32.4
Thecc.01G073700 Theobroma cacao HOM05D002156 ORTHO05D002328 2.0e-10 69.3 101 40.6
Aa31LG1G16160 Aethionema arabicum HOM05D002156 ORTHO05D002328 2.6e-10 68.9 59 57.6
AL8G43690 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 3.4e-10 68.6 139 32.4
EL10Ac6g15612 Beta vulgaris HOM05D002156 ORTHO05D002328 3.4e-10 68.6 100 41.0
Nitab4.5_0000036g0110 Nicotiana tabacum HOM05D002156 ORTHO05D002328 3.4e-10 68.6 63 54.0
Rhsim10G0099000 Rhododendron simsii HOM05D002156 ORTHO05D002328 4.4e-10 68.2 101 40.6
DCAR_025812 Daucus carota HOM05D003138 ORTHO05D003789 5.7e-10 67.8 102 43.1
Duzib264G1314 Durio zibethinus HOM05D002156 ORTHO05D002328 5.7e-10 67.8 59 52.5
Carub.0007s0804 Capsella rubella HOM05D002156 ORTHO05D002328 7.5e-10 67.4 59 54.2
CARHR279980 Cardamine hirsuta HOM05D002156 ORTHO05D002328 7.5e-10 67.4 139 33.1
SalBow3G0792 Salvia bowleyana HOM05D002156 ORTHO05D002328 7.5e-10 67.4 86 45.3
A06p32810 Brassica napus HOM05D002156 ORTHO05D002328 9.8e-10 67.0 139 30.9
Thhalv10004091m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 1.3e-09 66.6 139 31.7
Aqoxy113s001 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 1.7e-09 66.2 59 50.8
Aqoxy6G02572 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 1.7e-09 66.2 59 50.8
Thhalv10010344m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 1.7e-09 66.2 51 60.8
Gorai.008G083300 Gossypium raimondii HOM05D002156 ORTHO05D002328 1.7e-09 66.2 66 48.5
BcaNung05870 Brassica carinata HOM05D002156 ORTHO05D002328 2.2e-09 65.9 139 30.9
C03p59660 Brassica napus HOM05D002156 ORTHO05D002328 2.2e-09 65.9 139 30.9
BolC3t18228H Brassica oleracea HOM05D002156 ORTHO05D002328 2.2e-09 65.9 139 30.9
BraA06t26213Z Brassica rapa HOM05D002156 ORTHO05D002328 2.2e-09 65.9 139 30.2
Carub.0008s2686 Capsella rubella HOM05D002156 ORTHO05D002328 2.2e-09 65.9 56 57.1
AT5G67610 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 3.7e-09 65.1 139 31.7
Gohir.D12G075800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.7e-09 65.1 59 52.5
Oeu013327.1 Olea europaea HOM05D002156 ORTHO05D002328 3.7e-09 65.1 65 49.2
PSO541G2762 Papaver somniferum HOM05D002156 ORTHO05D002328 3.7e-09 65.1 65 50.8
PSO675G2996 Papaver somniferum HOM05D002156 ORTHO05D002328 3.7e-09 65.1 65 50.8
Carub.0007s0803 Capsella rubella HOM05D002156 ORTHO05D002328 4.9e-09 64.7 59 52.5
Hund13956 Selenicereus undatus HOM05D002156 ORTHO05D002328 8.3e-09 63.9 54 50.0
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-08 63.2 107 40.2
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-08 63.2 107 40.2
PGR102G2375 Punica granatum HOM05D002156 ORTHO05D002328 1.4e-08 63.2 62 56.5
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 3.1e-08 62.0 59 50.8
ATR0739G161 Amborella trichopoda HOM05D002156 ORTHO05D002328 4.5e-07 58.2 66 43.9
unitig_60.g25524 Utricularia gibba HOM05D002156 ORTHO05D002328 4.5e-07 58.2 65 43.1
Nitab4.5_0008452g0010 Nicotiana tabacum HOM05D002156 ORTHO05D002328 7.7e-07 57.4 45 57.8
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-06 56.2 50 54.0
AT3G49840 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 6.6e-06 54.3 50 54.0
CARHR158910 Cardamine hirsuta HOM05D002156 ORTHO05D002328 8.6e-06 53.9 47 55.3


User provided reference genes

Program Settings