Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 4.4e-36 154.1 76 100.0
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 5.4e-34 147.1 76 96.1
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 8.3e-27 123.2 74 81.1
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 2.4e-26 121.7 76 80.3
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 5.4e-26 120.6 75 80.0
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 1.2e-25 119.4 72 77.8
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 2.7e-25 118.2 77 79.2
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 6.0e-25 117.1 74 75.7
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 7.8e-25 116.7 76 75.0
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.0e-24 116.3 74 75.7
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.7e-24 115.5 72 75.0
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.9e-23 112.1 73 74.0
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.9e-23 112.1 65 81.5
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.5e-23 111.7 73 74.0
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 5.6e-23 110.5 72 72.2
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-22 109.0 74 71.6
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 2.8e-22 108.2 74 74.3
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 2.8e-22 108.2 71 71.8
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 8.1e-22 106.7 73 71.2
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.1e-21 106.3 72 73.6
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 5.2e-21 104.0 71 71.8
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 6.8e-21 103.6 73 69.9
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 8.9e-21 103.2 75 72.0
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.5e-20 102.4 69 73.9
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.5e-20 102.4 69 73.9
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.5e-20 102.4 73 68.5
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 1.5e-20 102.4 72 72.2
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 7.5e-20 100.1 69 72.5
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.7e-19 99.0 79 67.1
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.7e-19 99.0 69 72.5
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.7e-19 99.0 74 66.2
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 2.2e-19 98.6 72 66.7
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 2.9e-19 98.2 70 71.4
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 2.9e-19 98.2 73 67.1
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 4.9e-19 97.4 73 67.1
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 4.9e-19 97.4 75 66.7
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 6.4e-19 97.1 75 65.3
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 8.3e-19 96.7 74 63.5
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 8.3e-19 96.7 71 60.6
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 1.4e-18 95.9 73 67.1
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.9e-18 95.5 68 70.6
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 2.4e-18 95.1 73 67.1
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.4e-18 95.1 73 67.1
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.4e-18 95.1 73 67.1
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 3.2e-18 94.7 76 68.4
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 3.2e-18 94.7 79 63.3
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 3.2e-18 94.7 74 60.8
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 9.2e-18 93.2 69 62.3
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 9.2e-18 93.2 73 64.4
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.2e-17 92.8 76 67.1
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 1.2e-17 92.8 73 65.8
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.6e-17 92.4 69 68.1
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 2.7e-17 91.7 72 65.3
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 3.5e-17 91.3 81 59.3
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 4.6e-17 90.9 74 60.8
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 5.1e-16 87.4 73 60.3
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 8.6e-16 86.7 74 58.1
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.1e-15 86.3 83 54.2
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 1.9e-15 85.5 83 55.4
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 1.9e-15 85.5 69 60.9
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 2.5e-15 85.1 75 61.3
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 3.3e-15 84.7 81 55.6
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.3e-15 84.7 72 58.3
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 3.3e-15 84.7 72 58.3
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 4.3e-15 84.3 68 61.8
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 4.3e-15 84.3 72 65.3
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 4.3e-15 84.3 71 62.0
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 9.5e-15 83.2 69 60.9
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 9.5e-15 83.2 72 63.9
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.2e-14 82.8 81 55.6
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.2e-14 82.8 75 56.0
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.2e-14 82.8 69 59.4
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.2e-14 82.8 71 57.7
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.2e-14 82.8 77 57.1
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.6e-14 82.4 71 57.7
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 2.1e-14 82.0 85 52.9
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 2.1e-14 82.0 71 52.1
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.8e-14 81.6 80 53.8
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 2.8e-14 81.6 82 56.1
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 2.8e-14 81.6 82 56.1
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 3.6e-14 81.3 79 54.4
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 3.6e-14 81.3 74 59.5
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 3.6e-14 81.3 65 64.6
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 3.6e-14 81.3 67 59.7
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.7e-14 80.9 75 54.7
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 4.7e-14 80.9 75 58.7
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 4.7e-14 80.9 75 58.7
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 4.7e-14 80.9 75 58.7
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 8.1e-14 80.1 84 56.0
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 8.1e-14 80.1 81 53.1
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 8.1e-14 80.1 82 54.9
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 8.1e-14 80.1 82 54.9
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-13 79.7 75 54.7
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 1.1e-13 79.7 75 54.7
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 1.1e-13 79.7 75 54.7
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 1.1e-13 79.7 75 54.7
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 1.1e-13 79.7 75 54.7
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.1e-13 79.7 75 57.3
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.4e-13 79.3 74 54.1
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.4e-13 79.3 77 53.2
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.4e-13 79.3 77 53.2
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.4e-13 79.3 77 53.2
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 1.4e-13 79.3 72 55.6
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.4e-13 79.3 77 53.2
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 1.4e-13 79.3 65 58.5
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.8e-13 79.0 84 51.2
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 1.8e-13 79.0 65 61.5
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 1.8e-13 79.0 77 50.6
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.8e-13 79.0 77 55.8
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.8e-13 79.0 75 57.3
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 2.4e-13 78.6 77 53.2
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 2.4e-13 78.6 77 53.2
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 2.4e-13 78.6 77 53.2
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 2.4e-13 78.6 77 53.2
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 2.4e-13 78.6 66 56.1
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 3.1e-13 78.2 80 51.2
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 3.1e-13 78.2 77 53.2
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 3.1e-13 78.2 71 56.3
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 3.1e-13 78.2 71 56.3
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 3.1e-13 78.2 71 56.3
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 3.1e-13 78.2 71 54.9
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 3.1e-13 78.2 63 58.7
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 4.0e-13 77.8 71 54.9
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 5.2e-13 77.4 71 53.5
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 5.2e-13 77.4 71 53.5
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 5.2e-13 77.4 74 52.7
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 5.2e-13 77.4 65 55.4
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 6.8e-13 77.0 77 51.9
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 6.8e-13 77.0 79 55.7
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.2e-12 76.3 77 51.9
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.5e-12 75.9 71 53.5
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 1.5e-12 75.9 71 56.3
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.5e-12 75.9 72 52.8
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.3e-11 72.8 64 54.7
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.3e-11 72.8 64 57.8
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 4.9e-11 70.9 64 59.4
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.9e-10 68.9 64 51.6
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.9e-10 68.9 55 63.6
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.9e-10 68.9 79 50.6
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 3.2e-10 68.2 59 57.6
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.4e-10 67.4 63 57.1
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 7.8e-09 63.5 87 42.5
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 1.3e-08 62.8 60 53.3
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.3e-08 62.8 73 47.9
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 3.0e-08 61.6 73 46.6
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 5.1e-08 60.8 81 46.9
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.1e-08 60.8 77 42.9
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 6.6e-08 60.5 94 40.4
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.6e-06 55.8 33 72.7
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 6.2e-06 53.9 81 38.3


User provided reference genes

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