Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 5.1e-293 1010.4 516 100.0
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 4.8e-235 817.8 513 80.3
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 2.4e-234 815.5 499 82.8
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.9e-231 805.8 516 79.3
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 2.5e-231 805.4 519 79.2
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 6.1e-230 800.8 497 80.9
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.4e-226 788.9 498 80.7
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 3.2e-223 778.5 498 79.3
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 5.2e-221 771.2 502 77.3
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 3.3e-220 768.5 541 73.6
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 7.5e-220 767.3 542 73.6
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 2.8e-219 765.4 494 77.1
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 3.1e-218 761.9 505 75.8
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 9.1e-218 760.4 525 73.3
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 5.9e-217 757.7 493 76.3
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.2e-216 755.7 540 72.4
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 4.2e-215 751.5 493 75.5
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 5.5e-215 751.1 514 74.3
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 5.5e-215 751.1 465 80.4
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 9.4e-215 750.4 523 75.0
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 2.7e-214 748.8 519 75.1
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 1.0e-213 746.9 506 75.3
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 2.0e-212 742.7 543 70.9
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.7e-211 739.6 450 80.0
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 2.8e-211 738.8 450 80.0
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 8.3e-211 737.3 509 73.9
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 5.4e-210 734.6 496 74.0
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 7.0e-210 734.2 510 72.9
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 2.7e-209 732.3 423 82.5
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.3e-208 729.9 516 71.7
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 2.9e-208 728.8 474 76.2
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 6.5e-208 727.6 425 80.7
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 6.5e-208 727.6 543 68.9
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.1e-207 726.9 536 70.7
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.9e-207 726.1 521 70.2
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 1.9e-207 726.1 539 70.9
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 2.5e-207 725.7 534 69.7
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 8.0e-206 720.7 491 74.1
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 4.0e-205 718.4 508 72.4
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 2.0e-204 716.1 531 69.3
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 7.5e-204 714.1 517 70.8
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 9.8e-204 713.8 464 76.7
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.3e-203 713.4 542 68.5
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 3.7e-203 711.8 464 76.3
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.4e-202 709.9 510 71.4
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 9.2e-202 707.2 464 75.9
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 5.9e-201 704.5 519 70.1
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.0e-200 703.7 483 73.9
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.7e-200 703.0 476 75.2
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.3e-200 702.6 526 70.2
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.5e-199 699.9 459 74.3
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 1.2e-198 696.8 459 74.3
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 2.1e-198 696.0 425 78.1
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 6.1e-198 694.5 497 72.2
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.8e-197 693.0 527 68.3
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.8e-197 693.0 496 72.6
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.0e-197 692.2 502 69.9
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 5.2e-197 691.4 467 73.4
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.2e-196 690.3 520 70.0
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.6e-196 689.1 435 75.6
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 1.3e-195 686.8 470 73.2
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.3e-195 686.8 469 71.4
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 1.7e-195 686.4 502 70.1
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 2.9e-195 685.6 480 72.7
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 2.9e-195 685.6 480 72.7
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 6.4e-195 684.5 571 65.0
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.1e-194 683.7 498 69.3
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.8e-194 682.9 483 72.3
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.8e-194 682.9 483 72.3
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 1.8e-194 682.9 487 70.4
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 3.2e-194 682.2 472 71.4
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 4.6e-193 678.3 522 65.7
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 7.8e-193 677.6 454 71.4
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 7.8e-193 677.6 501 69.1
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.0e-192 677.2 466 74.2
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.7e-192 676.4 425 77.9
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 3.0e-192 675.6 488 70.5
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 3.9e-192 675.2 441 75.5
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 5.0e-192 674.9 426 75.6
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 5.0e-192 674.9 441 75.3
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 6.6e-192 674.5 433 74.6
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.5e-191 673.3 433 74.4
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.2e-190 670.2 498 68.9
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.6e-190 669.8 493 69.6
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.6e-190 669.8 493 69.6
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 2.8e-190 669.1 495 69.3
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 2.8e-190 669.1 487 69.6
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 2.8e-190 669.1 487 69.6
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 3.6e-190 668.7 504 68.7
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 6.2e-190 667.9 557 64.6
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 6.2e-190 667.9 485 68.5
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.1e-189 667.2 487 69.4
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-189 666.0 498 70.9
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 2.3e-189 666.0 486 69.1
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.2e-189 664.8 498 70.9
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.2e-189 664.8 494 70.2
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 5.2e-189 664.8 564 61.9
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.1e-186 657.1 582 62.2
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.9e-186 656.4 510 65.9
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.4e-186 656.0 505 68.7
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 5.4e-186 654.8 420 75.5
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.6e-185 651.7 494 70.0
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 6.2e-182 641.3 463 68.0
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 3.4e-180 635.6 471 70.7
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 1.7e-179 633.3 442 72.2
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 3.7e-179 632.1 505 66.9
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 4.6e-177 625.2 538 63.8
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 7.8e-177 624.4 470 67.7
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.4e-173 613.6 474 65.6
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.8e-173 613.2 430 68.4
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.5e-172 610.1 431 72.2
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.9e-168 595.5 379 81.5
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.5e-167 592.8 368 74.7
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.5e-167 592.8 500 63.4
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 4.3e-167 592.0 532 59.4
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 8.1e-166 587.8 430 71.2
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 3.1e-165 585.9 518 61.0
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 3.1e-165 585.9 561 58.6
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 4.0e-165 585.5 357 79.3
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 1.5e-164 583.6 474 58.6
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 4.4e-164 582.0 534 61.8
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 8.4e-163 577.8 422 65.2
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 7.1e-162 574.7 467 61.5
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 9.3e-162 574.3 467 65.7
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.3e-160 569.7 516 58.3
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 8.7e-160 567.8 527 59.2
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 3.3e-159 565.8 362 78.2
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.3e-159 564.7 419 67.8
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 9.6e-159 564.3 419 66.8
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 3.6e-158 562.4 473 57.9
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 2.4e-157 559.7 525 60.4
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.9e-154 550.1 395 68.4
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 4.6e-153 545.4 368 72.3
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 9.0e-149 531.2 477 60.8
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 7.1e-146 521.5 450 62.4
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 1.5e-143 513.8 360 73.3
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.9e-143 513.5 409 62.8
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.1e-142 510.0 407 63.6
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 4.5e-140 502.3 362 67.7
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 1.0e-139 501.1 357 71.1
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 2.2e-139 500.0 491 58.0
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.7e-137 493.0 314 78.0
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.7e-137 493.0 427 63.2
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 5.9e-132 475.3 377 69.5
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.0e-131 474.6 397 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 4.2e-122 442.6 360 59.7
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 4.4e-119 432.6 389 60.2
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.4e-112 411.0 282 73.0
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.4e-104 384.4 210 84.3
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 3.0e-96 356.7 459 43.1
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 8.3e-78 295.4 226 69.0
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.5e-74 284.6 307 56.7
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 9.5e-74 282.0 146 87.7
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 3.1e-72 276.9 266 62.8
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 6.4e-70 269.2 239 62.8
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 5.4e-69 266.2 155 81.3
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.6e-63 247.3 193 60.6
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 9.2e-61 238.8 408 35.0
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 3.9e-59 233.4 160 63.8
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.6e-59 232.3 464 37.9
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.5e-50 204.9 247 54.3
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 9.6e-50 202.2 539 30.2
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 5.6e-42 176.4 101 77.2
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.0e-19 102.4 212 32.1
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.3e-19 102.1 229 30.6
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 2.3e-19 101.3 53 86.8
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 3.9e-19 100.5 49 91.8
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 8.2e-17 92.8 51 84.3
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 9.0e-16 89.4 127 49.6
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.2e-12 79.0 63 55.6
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 3.0e-11 74.3 106 41.5
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 4.3e-10 70.5 39 82.1
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 9.1e-08 62.8 42 71.4
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 5.9e-07 60.1 40 72.5


User provided reference genes

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