Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 2.0e-95 352.4 179 100.0
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 6.3e-25 118.2 75 81.3
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 1.1e-24 117.5 74 79.7
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 1.2e-23 114.0 77 76.6
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 1.2e-23 114.0 72 81.9
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 4.5e-23 112.1 77 75.3
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.9e-22 109.4 91 68.1
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 8.5e-22 107.8 91 67.0
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 1.1e-21 107.5 76 71.1
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 1.9e-21 106.7 71 76.1
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 3.2e-21 105.9 71 76.1
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 2.7e-20 102.8 74 70.3
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.4e-19 100.5 73 72.6
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 1.8e-19 100.1 71 69.0
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.8e-19 100.1 71 76.1
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.8e-19 100.1 76 67.1
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.8e-19 100.1 76 67.1
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 2.3e-19 99.8 82 64.6
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 2.3e-19 99.8 83 63.9
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 4.0e-19 99.0 87 62.1
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 6.8e-19 98.2 83 60.2
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 8.8e-19 97.8 71 70.4
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 8.8e-19 97.8 71 74.6
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 1.2e-18 97.4 71 74.6
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 1.2e-18 97.4 81 61.7
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 1.2e-18 97.4 67 73.1
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 1.5e-18 97.1 86 59.3
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.5e-18 97.1 71 73.2
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 3.4e-18 95.9 76 69.7
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 4.4e-18 95.5 63 74.6
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 4.4e-18 95.5 92 57.6
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 4.4e-18 95.5 83 61.4
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 5.7e-18 95.1 72 69.4
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 5.7e-18 95.1 66 71.2
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 7.5e-18 94.7 71 71.8
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 9.8e-18 94.4 75 64.0
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 1.3e-17 94.0 84 63.1
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 1.7e-17 93.6 72 70.8
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 2.2e-17 93.2 67 68.7
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 2.8e-17 92.8 73 64.4
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.8e-17 92.8 73 64.4
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 3.7e-17 92.4 71 70.4
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 3.7e-17 92.4 80 61.2
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 4.8e-17 92.0 69 71.0
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 6.3e-17 91.7 67 68.7
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 6.3e-17 91.7 73 68.5
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 8.3e-17 91.3 67 68.7
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 8.3e-17 91.3 67 70.1
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.1e-16 90.9 71 66.2
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 1.1e-16 90.9 73 65.8
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.1e-16 90.9 59 78.0
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 1.1e-16 90.9 67 65.7
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 1.4e-16 90.5 79 60.8
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 1.4e-16 90.5 71 71.8
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 1.8e-16 90.1 63 69.8
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 1.8e-16 90.1 78 62.8
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 2.4e-16 89.7 67 68.7
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 2.4e-16 89.7 59 72.9
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 2.4e-16 89.7 67 68.7
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.1e-16 89.4 60 71.7
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 3.1e-16 89.4 71 66.2
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 3.1e-16 89.4 71 66.2
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 3.1e-16 89.4 90 55.6
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 3.1e-16 89.4 59 71.2
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 5.4e-16 88.6 71 70.4
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 5.4e-16 88.6 67 65.7
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 5.4e-16 88.6 72 65.3
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 7.0e-16 88.2 68 67.6
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 9.1e-16 87.8 71 64.8
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 1.2e-15 87.4 55 74.5
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 2.0e-15 86.7 66 69.7
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 2.0e-15 86.7 67 65.7
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 2.7e-15 86.3 67 67.2
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 2.7e-15 86.3 67 67.2
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 2.7e-15 86.3 67 67.2
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 2.7e-15 86.3 67 67.2
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 3.5e-15 85.9 73 65.8
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 4.5e-15 85.5 63 71.4
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 4.5e-15 85.5 67 64.2
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 5.9e-15 85.1 71 66.2
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 7.7e-15 84.7 71 60.6
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.0e-14 84.3 67 67.2
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 1.7e-14 83.6 82 54.9
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 2.9e-14 82.8 56 73.2
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 2.9e-14 82.8 63 65.1
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 2.9e-14 82.8 63 65.1
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 3.8e-14 82.4 73 58.9
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 5.0e-14 82.0 71 60.6
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 6.5e-14 81.6 61 68.9
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.1e-13 80.9 52 73.1
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 1.9e-13 80.1 50 76.0
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 2.5e-13 79.7 55 69.1
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 7.2e-13 78.2 50 72.0
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 2.1e-12 76.6 84 50.0
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 1.4e-11 73.9 43 83.7
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 1.8e-11 73.6 65 55.4
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 5.7e-10 68.6 58 58.6
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 5.7e-10 68.6 60 53.3
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 6.3e-09 65.1 47 68.1
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 1.6e-07 60.5 54 51.9
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.3e-06 56.6 50 62.0


User provided reference genes

Program Settings