Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 1.6e-234 815.8 448 100.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.0e-181 639.4 453 78.1
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 1.5e-171 606.7 462 77.5
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 9.5e-171 604.0 455 76.0
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 5.2e-169 598.2 458 75.8
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 5.2e-169 598.2 458 75.8
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.8e-161 573.2 464 73.7
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.3e-148 529.6 458 70.7
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.1e-137 494.2 458 63.3
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.1e-137 492.7 454 64.3
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 5.3e-137 491.9 458 64.2
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 4.4e-136 488.8 458 62.9
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 4.4e-136 488.8 461 63.6
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 1.0e-132 477.6 458 63.8
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.5e-131 473.8 458 62.9
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 1.5e-131 473.8 495 56.0
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 3.6e-130 469.2 458 62.0
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 3.6e-130 469.2 458 63.1
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 6.2e-130 468.4 458 61.6
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 3.1e-129 466.1 455 62.2
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.6e-128 463.0 477 61.8
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 3.8e-127 459.1 466 62.9
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 8.4e-127 458.0 461 61.0
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 5.4e-126 455.3 461 60.7
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.7e-125 453.0 457 60.2
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 3.5e-125 452.6 465 60.0
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 1.3e-124 450.7 459 59.3
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.3e-124 449.9 477 58.9
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.9e-124 449.1 462 60.2
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 2.8e-122 443.0 461 60.5
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.4e-121 440.7 463 58.7
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 4.0e-121 439.1 457 59.1
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 6.9e-121 438.3 457 58.9
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 9.0e-121 438.0 385 68.3
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 7.6e-120 434.9 461 60.7
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 4.9e-119 432.2 461 58.1
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 8.4e-119 431.4 472 54.7
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.4e-118 430.6 472 58.1
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.7e-117 426.4 457 59.1
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.8e-116 423.7 451 58.5
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.3e-114 417.5 456 56.8
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.4e-113 414.1 457 58.0
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 5.3e-113 412.1 461 58.1
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 6.9e-113 411.8 456 56.6
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.5e-112 410.6 476 54.6
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.0e-112 410.2 461 57.9
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 5.8e-112 408.7 456 55.9
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.9e-111 405.6 458 57.4
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 8.4e-111 404.8 475 52.2
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 3.2e-110 402.9 483 54.7
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 7.1e-110 401.7 476 54.8
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.6e-109 400.6 457 55.6
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 7.9e-109 398.3 448 51.8
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.5e-107 393.3 457 55.6
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 2.5e-107 393.3 457 55.6
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.3e-107 392.9 470 54.7
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.0e-104 383.6 430 57.9
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 5.9e-104 382.1 458 52.2
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 3.8e-103 379.4 438 56.8
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 5.0e-103 379.0 470 53.4
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.5e-102 376.7 424 55.4
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.4e-100 370.9 238 78.6
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.9e-100 369.4 438 55.9
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 2.5e-99 366.7 429 49.7
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.8e-97 360.5 449 51.2
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.8e-97 360.5 433 53.6
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 1.1e-94 351.3 468 51.5
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.1e-89 334.7 457 50.8
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 8.5e-87 325.1 464 50.2
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 2.1e-85 320.5 450 48.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.1e-81 308.1 432 49.5
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.4e-81 307.0 450 43.8
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.0e-75 287.3 467 45.8
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.7e-74 283.1 448 46.4
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.7e-66 257.7 376 54.3
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.0e-60 238.4 450 38.9
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 4.0e-60 236.5 476 41.4
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 1.7e-58 231.1 479 42.6
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.3e-50 204.9 140 68.6
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.3e-50 204.9 140 68.6
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 6.8e-44 182.6 472 34.5
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 8.9e-44 182.2 452 35.2
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 1.6e-40 171.4 231 44.6
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 1.6e-40 171.4 231 44.6
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 7.8e-40 169.1 144 55.6
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.7e-39 167.9 432 35.4
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.7e-39 167.9 432 35.2
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 3.9e-39 166.8 152 55.9
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 5.1e-39 166.4 251 42.2
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.5e-38 164.9 155 52.9
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 3.3e-38 163.7 148 54.1
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 4.3e-38 163.3 127 57.5
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 5.6e-38 162.9 454 35.2
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 7.3e-38 162.5 460 32.6
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 9.5e-38 162.2 452 36.1
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.2e-37 161.8 127 58.3
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 1.2e-37 161.8 140 53.6
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.6e-37 161.4 138 57.2
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.6e-37 161.4 138 57.2
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.6e-37 161.4 149 52.3
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 4.7e-37 159.8 128 56.2
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 8.1e-37 159.1 128 55.5
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.1e-36 158.7 149 51.0
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 1.1e-36 158.7 149 51.0
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 1.1e-36 158.7 144 52.8
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.1e-36 158.7 128 55.5
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.4e-36 158.3 436 32.3
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.8e-36 157.9 127 55.1
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.3e-36 157.5 282 39.4
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 4.0e-36 156.8 452 35.2
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 5.2e-36 156.4 125 56.0
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 8.9e-36 155.6 453 35.5
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 8.9e-36 155.6 468 32.3
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-35 155.2 127 54.3
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-35 155.2 127 54.3
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.5e-35 154.8 281 37.7
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 2.6e-35 154.1 437 30.7
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.4e-35 153.7 458 34.9
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 3.4e-35 153.7 465 35.7
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 4.4e-35 153.3 447 36.2
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 7.6e-35 152.5 436 33.3
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 7.6e-35 152.5 457 37.0
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 9.9e-35 152.1 127 55.1
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 9.9e-35 152.1 438 36.5
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 1.3e-34 151.8 78 93.6
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 2.2e-34 151.0 450 34.0
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.2e-34 151.0 440 34.5
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 2.9e-34 150.6 125 53.6
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.9e-34 150.6 421 32.5
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 6.4e-34 149.4 455 31.6
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 6.4e-34 149.4 457 35.0
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 8.3e-34 149.1 431 31.8
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.1e-33 148.7 308 36.4
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.4e-33 148.3 127 51.2
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.9e-33 147.9 236 39.4
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 4.1e-33 146.7 450 34.0
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.1e-33 146.7 467 33.6
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 5.4e-33 146.4 446 34.3
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.6e-32 144.8 280 34.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.6e-32 144.8 462 32.3
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.6e-32 144.8 428 32.7
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.6e-32 144.8 411 34.3
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 2.1e-32 144.4 432 30.1
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.7e-32 144.1 397 32.2
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 3.5e-32 143.7 464 31.2
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 7.8e-32 142.5 450 35.6
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 1.0e-31 142.1 423 32.6
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.0e-31 142.1 453 33.8
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.0e-31 142.1 357 33.3
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 3.0e-31 140.6 429 34.5
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.1e-31 139.8 472 31.6
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 3.3e-30 137.1 421 33.7
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 5.6e-30 136.3 455 33.6
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 8.1e-29 132.5 450 33.6
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 1.3e-26 125.2 453 32.9
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.9e-26 124.0 409 28.1
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 4.3e-22 110.2 387 37.0
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 1.5e-19 101.7 150 45.3
Glyma.15G117800 Glycine max HOM05D004237 ORTHO05D005002 3.2e-09 67.4 72 54.2
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 1.2e-08 65.5 195 41.0
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 4.6e-08 63.5 60 53.3
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 1.8e-07 61.6 111 38.7
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 5.1e-07 60.1 85 42.4
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 5.1e-07 60.1 77 45.5


User provided reference genes

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