Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.7e-102 375.9 183 100.0
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 3.7e-57 225.3 185 64.3
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 9.2e-56 220.7 189 62.4
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.7e-55 219.2 145 73.8
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 8.6e-54 214.2 190 60.5
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 3.1e-51 205.7 182 59.3
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 4.0e-51 205.3 152 67.8
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 4.0e-51 205.3 183 59.6
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.3e-49 200.3 178 59.0
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.2e-49 199.5 177 58.2
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 6.4e-49 198.0 182 58.2
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 9.2e-48 194.1 182 57.1
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 3.9e-46 188.7 182 54.9
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 8.7e-46 187.6 181 53.6
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.5e-45 186.8 180 50.6
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.9e-45 186.4 175 54.3
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 9.6e-45 184.1 185 53.0
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 2.8e-44 182.6 185 49.2
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 3.6e-44 182.2 185 49.2
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 4.7e-44 181.8 194 49.0
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.7e-44 181.8 154 57.1
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 4.7e-44 181.8 187 51.9
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 6.2e-44 181.4 180 50.6
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 6.9e-43 177.9 164 53.0
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.2e-42 177.2 182 56.0
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.2e-42 177.2 194 50.0
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.6e-42 176.0 182 48.9
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 3.4e-42 175.6 180 52.2
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 4.4e-42 175.3 151 57.6
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 8.4e-41 171.0 197 49.7
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 3.2e-40 169.1 163 52.1
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.7e-39 166.0 157 55.4
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 4.6e-39 165.2 179 46.9
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.3e-38 163.7 143 55.2
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 1.3e-38 163.7 143 55.2
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.7e-38 163.3 155 53.5
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 5.1e-38 161.8 173 49.7
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 8.7e-38 161.0 157 53.5
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 8.7e-38 161.0 143 55.9
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.5e-37 159.5 147 55.8
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.5e-37 159.5 163 50.9
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 2.5e-37 159.5 198 46.5
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 3.3e-37 159.1 135 57.8
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 4.3e-37 158.7 146 56.8
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 4.3e-37 158.7 156 53.2
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 5.6e-37 158.3 156 50.0
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 9.6e-37 157.5 158 48.7
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.3e-36 157.1 145 51.7
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 1.3e-36 157.1 182 46.7
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 4.8e-36 155.2 146 56.2
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 4.8e-36 155.2 134 56.0
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 6.2e-36 154.8 152 52.6
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 6.2e-36 154.8 152 52.6
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 6.2e-36 154.8 160 53.8
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 6.2e-36 154.8 188 47.3
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.1e-35 152.5 145 51.0
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 5.3e-35 151.8 169 47.3
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 5.8e-34 148.3 169 44.4
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 2.2e-33 146.4 144 49.3
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 3.8e-33 145.6 183 45.9
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.8e-33 145.6 185 44.9
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 6.4e-33 144.8 169 43.8
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 2.4e-32 142.9 179 44.1
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 2.4e-32 142.9 180 45.0
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.2e-32 142.1 169 43.2
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 7.1e-32 141.4 148 52.0
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.7e-31 139.4 139 48.9
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 2.7e-31 139.4 169 46.2
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 4.6e-31 138.7 156 48.1
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 4.6e-31 138.7 173 42.8
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 6.0e-31 138.3 183 43.7
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 1.3e-30 137.1 190 45.3
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 1.3e-30 137.1 185 40.0
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.3e-30 137.1 146 50.7
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.8e-30 136.7 150 47.3
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 2.3e-30 136.3 146 45.9
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 3.9e-30 135.6 149 51.7
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.9e-30 135.6 156 46.8
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.9e-30 135.6 156 46.8
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 5.1e-30 135.2 130 52.3
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.5e-29 133.7 169 42.6
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 2.5e-29 132.9 152 48.7
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 2.5e-29 132.9 168 42.3
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 4.3e-29 132.1 164 38.4
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 9.6e-29 131.0 155 45.2
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 9.6e-29 131.0 140 50.7
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 1.3e-28 130.6 143 44.8
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 2.1e-28 129.8 136 47.8
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.1e-28 129.8 128 48.4
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 3.7e-28 129.0 168 43.5
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 3.7e-28 129.0 136 51.5
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.4e-27 127.1 140 49.3
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 3.1e-27 125.9 182 39.0
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 4.0e-27 125.6 168 40.5
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 6.9e-27 124.8 139 46.8
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 9.0e-27 124.4 173 41.6
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.2e-26 124.0 140 45.7
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 1.5e-26 123.6 167 41.3
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.5e-26 123.6 145 46.2
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.6e-26 122.9 142 44.4
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 3.4e-26 122.5 141 46.8
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 7.6e-26 121.3 142 45.1
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 7.6e-26 121.3 142 45.1
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 9.9e-26 120.9 173 38.7
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.3e-25 120.6 149 45.0
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 2.2e-25 119.8 139 44.6
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.2e-25 119.8 149 42.3
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.8e-25 119.0 140 43.6
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 4.9e-25 118.6 169 42.0
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 6.4e-25 118.2 142 44.4
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 6.4e-25 118.2 142 44.4
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 6.4e-25 118.2 142 41.5
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 8.4e-25 117.9 140 42.9
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 8.4e-25 117.9 140 42.9
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 8.4e-25 117.9 136 44.9
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.1e-24 117.5 140 42.9
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 1.4e-24 117.1 143 40.6
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 2.4e-24 116.3 137 43.1
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.4e-24 116.3 137 44.5
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 4.2e-24 115.5 149 41.6
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 5.5e-24 115.2 147 41.5
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.6e-23 113.6 137 43.8
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.6e-23 113.6 166 41.6
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 2.1e-23 113.2 147 45.6
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.7e-23 112.8 137 43.1
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 2.7e-23 112.8 140 42.1
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 3.5e-23 112.5 146 44.5
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.5e-23 112.5 91 58.2
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 7.9e-23 111.3 143 43.4
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 7.9e-23 111.3 143 43.4
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-22 110.9 143 42.7
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-22 110.9 137 43.1
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 1.0e-22 110.9 148 41.9
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.0e-22 110.9 143 42.7
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.3e-22 110.5 139 46.0
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.8e-22 110.2 138 42.8
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 1.8e-22 110.2 137 43.1
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 1.8e-22 110.2 137 43.1
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.8e-22 110.2 138 42.0
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.8e-22 110.2 188 34.6
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.3e-22 109.8 137 43.1
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.3e-22 109.8 140 42.9
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.9e-22 109.0 137 40.9
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 8.7e-22 107.8 166 38.6
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.1e-21 107.5 137 40.9
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 1.1e-21 107.5 166 38.6
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.5e-21 107.1 140 40.7
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.5e-21 107.1 143 41.3
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 1.9e-21 106.7 137 42.3
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 2.5e-21 106.3 144 41.0
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 3.3e-21 105.9 137 43.1
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 4.3e-21 105.5 143 42.0
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 9.6e-21 104.4 140 42.1
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 9.6e-21 104.4 140 41.4
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-20 104.0 141 40.4
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-20 103.6 143 41.3
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 1.6e-20 103.6 140 42.1
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 2.1e-20 103.2 113 44.2
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 2.1e-20 103.2 169 39.1
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 4.8e-20 102.1 140 41.4
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 6.2e-20 101.7 140 40.7
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 8.2e-20 101.3 143 40.6
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 8.2e-20 101.3 140 41.4
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 1.1e-19 100.9 137 40.1
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 1.1e-19 100.9 137 40.1
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.1e-19 100.9 146 40.4
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 1.8e-19 100.1 137 40.1
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 1.8e-19 100.1 137 40.1
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 1.8e-19 100.1 137 40.1
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 2.4e-19 99.8 174 35.1
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.4e-19 99.8 166 36.7
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 3.1e-19 99.4 127 42.5
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 9.0e-19 97.8 137 40.1
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.5e-18 97.1 143 38.5
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 1.4e-16 90.5 81 51.9
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 1.9e-16 90.1 96 42.7
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 4.3e-13 79.0 97 40.2
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-09 67.4 80 43.8
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 1.2e-07 60.8 74 47.3
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 2.7e-07 59.7 116 32.8


User provided reference genes

Program Settings