Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 1.1e-235 819.7 435 100.0
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 6.3e-188 661.0 443 83.3
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 5.6e-184 647.9 449 77.7
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 7.3e-184 647.5 444 81.5
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 3.5e-178 628.6 449 76.2
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 1.0e-177 627.1 449 75.9
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 2.3e-169 599.4 441 77.6
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 8.6e-169 597.4 446 75.8
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 2.4e-155 552.7 380 76.6
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 3.6e-151 538.9 459 65.1
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 4.0e-150 535.4 459 65.6
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 2.6e-149 532.7 456 65.8
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 1.4e-147 526.9 465 64.3
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 1.7e-145 520.0 461 62.7
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 1.1e-144 517.3 460 65.9
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 5.8e-141 505.0 470 61.5
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 7.6e-141 504.6 442 62.7
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 2.9e-140 502.7 447 64.9
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 7.1e-139 498.0 460 61.3
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 1.2e-138 497.3 460 60.7
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 3.5e-138 495.7 449 60.6
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 7.9e-138 494.6 461 62.7
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 6.7e-137 491.5 460 60.2
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 8.1e-135 484.6 461 60.3
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.7e-132 476.9 412 64.8
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 3.8e-132 475.7 479 59.3
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 6.4e-132 474.9 457 60.2
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 8.4e-132 474.6 450 61.1
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 9.3e-131 471.1 453 60.3
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 3.0e-129 466.1 422 62.3
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 6.7e-129 464.9 460 58.3
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 1.9e-128 463.4 466 58.4
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 2.5e-128 463.0 460 57.8
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 2.8e-127 459.5 454 56.8
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 2.8e-127 459.5 460 57.4
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 6.2e-127 458.4 454 58.4
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 4.5e-125 452.2 468 57.3
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.7e-124 450.3 481 58.0
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 6.5e-124 448.4 389 65.6
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 1.4e-123 447.2 456 56.8
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 3.2e-123 446.0 433 57.7
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 7.1e-123 444.9 455 57.4
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 9.3e-123 444.5 479 53.9
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 1.6e-122 443.7 463 56.4
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 1.5e-120 437.2 397 60.7
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 1.6e-119 433.7 458 54.4
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 3.7e-119 432.6 442 55.0
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 2.0e-117 426.8 449 55.5
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 7.7e-117 424.9 459 55.6
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 2.2e-116 423.3 472 53.0
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 6.5e-116 421.8 317 71.0
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 6.5e-116 421.8 479 55.3
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 8.5e-116 421.4 460 55.9
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 1.4e-115 420.6 460 55.0
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 2.5e-115 419.9 472 52.8
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 3.2e-115 419.5 472 52.5
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.2e-115 419.1 479 54.9
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 9.4e-115 417.9 480 54.8
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 2.3e-113 413.3 465 53.1
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 9.7e-112 407.9 469 52.7
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 1.7e-111 407.1 453 55.2
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 1.7e-111 407.1 465 54.0
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 1.1e-110 404.4 343 62.7
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 1.4e-110 404.1 385 56.9
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 1.5e-109 400.6 458 53.3
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 2.0e-109 400.2 474 52.5
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 2.9e-108 396.4 449 52.6
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 3.8e-108 396.0 463 50.3
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 8.5e-108 394.8 451 55.4
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 8.5e-108 394.8 472 56.1
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 8.5e-108 394.8 461 50.5
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 3.2e-107 392.9 323 65.3
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 9.4e-107 391.3 450 54.2
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 7.9e-106 388.3 444 51.4
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 1.0e-105 387.9 455 54.5
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 1.8e-105 387.1 452 52.9
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 1.8e-105 387.1 458 53.9
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 1.8e-105 387.1 427 51.8
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 3.0e-105 386.3 377 58.1
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 5.1e-105 385.6 453 56.3
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 1.1e-104 384.4 458 53.9
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 7.4e-104 381.7 252 77.4
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 3.7e-103 379.4 409 52.8
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 4.1e-102 375.9 461 52.7
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 5.9e-101 372.1 342 59.1
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 1.2e-98 364.4 390 53.3
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.6e-98 364.0 354 59.0
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 2.7e-98 363.2 411 51.3
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 6.7e-97 358.6 346 59.5
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 3.1e-94 349.7 518 44.4
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.2e-91 339.3 337 58.2
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 1.1e-78 298.1 367 50.4
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 4.1e-78 296.2 340 51.5
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 4.5e-77 292.7 271 60.1
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 1.5e-75 287.7 467 44.5
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 7.5e-72 275.4 486 40.3
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 2.9e-71 273.5 456 38.4
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.4e-70 271.2 485 38.8
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.3e-68 263.8 180 73.3
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 5.4e-62 242.7 427 40.7
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 3.0e-60 236.9 176 74.4
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 3.2e-54 216.9 355 40.0
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 3.5e-53 213.4 208 50.5
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 7.3e-51 205.7 412 39.1
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 1.6e-50 204.5 205 59.0
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 7.6e-32 142.5 146 48.6
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 6.4e-23 112.8 179 41.3
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 1.2e-16 92.0 224 32.1
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 4.6e-13 80.1 62 64.5
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 7.4e-11 72.8 39 79.5
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 4.5e-08 63.5 86 43.0


User provided reference genes

Program Settings