Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 0.0e+00 1526.5 793 100.0
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 6.0e-237 824.7 885 56.9
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 1.3e-236 823.5 872 56.8
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 1.1e-233 813.9 859 56.8
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 1.0e-231 807.4 880 56.5
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.4e-225 786.9 888 54.6
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 1.8e-225 786.6 884 54.4
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 1.4e-220 770.4 887 54.0
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 1.2e-216 757.3 888 52.4
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 1.2e-216 757.3 888 52.4
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 4.4e-211 738.8 871 52.4
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 1.1e-209 734.2 868 53.0
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.2e-205 720.7 872 51.9
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 6.8e-204 714.9 859 52.2
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 4.4e-203 712.2 873 52.2
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 1.7e-202 710.3 864 51.5
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 3.2e-198 696.0 867 51.9
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 4.4e-187 659.1 887 46.7
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 2.5e-182 643.3 887 46.7
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 4.4e-179 632.5 881 45.3
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 1.9e-177 627.1 888 45.0
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 2.7e-176 623.2 887 45.8
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 5.6e-174 615.5 886 45.1
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 9.5e-174 614.8 871 45.4
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 8.0e-173 611.7 882 45.1
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.5e-171 607.4 876 44.2
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 7.5e-171 605.1 876 44.2
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 1.1e-169 601.3 841 45.2
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.4e-169 600.9 878 44.2
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.2e-168 597.8 887 44.3
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 1.7e-167 594.0 889 43.9
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 5.6e-166 589.0 892 42.6
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 1.5e-163 580.9 885 43.6
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 2.0e-163 580.5 885 44.1
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 2.0e-163 580.5 891 43.7
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 9.9e-163 578.2 885 44.1
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.2e-162 577.0 885 43.8
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 3.7e-162 576.2 881 42.8
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.1e-161 574.7 892 43.3
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 3.2e-161 573.2 881 43.0
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 6.0e-160 568.9 887 43.0
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 1.2e-157 561.2 891 42.9
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.8e-157 560.1 886 43.0
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 3.8e-154 549.7 880 42.7
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.1e-153 548.1 877 44.4
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 1.2e-152 544.7 861 42.7
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 3.0e-151 540.0 835 41.7
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 6.2e-149 532.3 886 40.5
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 6.2e-149 532.3 885 40.8
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 1.4e-148 531.2 894 41.1
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 2.4e-148 530.4 835 43.2
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 5.3e-148 529.3 958 39.5
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 3.4e-147 526.6 890 40.8
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 7.6e-147 525.4 655 50.2
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 6.4e-146 522.3 893 40.1
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.4e-145 521.2 861 41.7
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 2.4e-145 520.4 886 40.0
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 2.4e-145 520.4 828 42.6
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.2e-145 520.0 861 41.6
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 9.3e-145 518.5 881 39.6
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 1.6e-144 517.7 865 41.0
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 7.3e-142 508.8 831 43.3
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 1.5e-139 501.1 877 42.0
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 4.9e-138 496.1 876 39.0
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.1e-137 495.0 875 39.2
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.8e-135 487.6 860 39.9
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 3.3e-134 483.4 876 38.5
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.3e-134 483.0 878 38.2
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 7.6e-131 472.2 852 39.0
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 1.3e-130 471.5 834 40.0
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 2.9e-130 470.3 883 38.6
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 6.5e-130 469.2 879 37.7
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 5.5e-129 466.1 824 42.7
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 9.3e-129 465.3 886 38.4
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 2.0e-123 447.6 647 44.0
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 2.6e-123 447.2 884 38.1
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 3.5e-120 436.8 866 37.1
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 4.6e-120 436.4 859 37.6
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 1.4e-116 424.9 847 38.1
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 2.0e-115 421.0 823 34.9
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 5.9e-115 419.5 844 36.5
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 6.5e-114 416.0 883 35.6
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 3.2e-113 413.7 933 33.9
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 2.7e-112 410.6 814 37.0
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 3.0e-111 407.1 932 33.3
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 8.8e-111 405.6 881 36.1
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.5e-110 404.8 881 36.1
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 2.8e-109 400.6 754 40.2
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 4.8e-109 399.8 886 35.1
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.8e-108 397.9 770 37.9
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.2e-107 395.2 938 33.6
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.2e-107 395.2 818 36.6
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 2.9e-106 390.6 804 36.9
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 3.2e-105 387.1 800 37.9
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 7.9e-104 382.5 800 37.8
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 3.9e-103 380.2 911 34.1
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 8.8e-103 379.0 800 37.6
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 1.5e-102 378.3 916 34.1
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 5.7e-102 376.3 831 34.8
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 2.8e-101 374.0 825 36.2
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 8.2e-101 372.5 823 35.5
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.2e-99 368.6 960 31.2
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 3.7e-93 347.1 848 34.6
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.3e-90 338.6 890 32.5
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 2.2e-90 337.8 857 34.8
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 3.6e-88 330.5 848 34.0
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 8.8e-87 325.9 853 33.8
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 1.5e-86 325.1 847 34.4
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 1.5e-86 325.1 855 34.0
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 1.3e-85 322.0 849 33.6
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 1.3e-85 322.0 849 33.6
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 2.2e-85 321.2 853 33.6
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 2.2e-85 321.2 853 33.6
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 4.8e-85 320.1 852 33.7
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 9.1e-84 315.8 852 34.0
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 2.5e-81 307.8 836 33.0
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 3.5e-75 287.3 688 35.2
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.0e-71 273.9 660 35.8
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 6.8e-71 273.1 837 29.6
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 8.9e-71 272.7 836 31.3
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 2.6e-70 271.2 848 31.8
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 2.2e-61 241.5 874 29.3
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 2.4e-60 238.0 599 33.1
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 6.0e-59 233.4 213 62.9
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 6.0e-59 233.4 816 29.9
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 8.1e-56 223.0 899 29.1
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 4.0e-47 194.1 556 34.5
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 7.6e-46 189.9 926 26.6
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.9e-45 188.0 889 25.6
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 6.6e-42 176.8 489 34.2
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 2.6e-38 164.9 406 31.5
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 1.1e-36 159.5 772 26.4
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 7.1e-36 156.8 179 49.7
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 1.5e-30 139.0 199 45.7
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 1.6e-27 129.0 137 56.9
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.5e-25 122.5 324 34.6
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 6.9e-23 113.6 488 31.1
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 6.9e-23 113.6 209 41.1
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 4.5e-22 110.9 227 36.1
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 1.6e-19 102.4 276 31.9
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 2.1e-19 102.1 486 26.5
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 9.0e-15 86.7 781 24.8
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.9e-13 81.6 326 30.1
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 2.7e-11 75.1 151 36.4
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 4.3e-09 67.8 153 35.9
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 2.6e-06 58.5 110 38.2


User provided reference genes

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