Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 4.4e-192 674.5 344 100.0
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 1.0e-87 327.8 384 55.7
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 2.1e-40 170.6 399 38.6
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 2.1e-40 170.6 399 38.6
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 1.9e-33 147.5 357 35.6
Medtr4g130690 Medicago truncatula HOM05D003426 ORTHO05D003816 4.2e-33 146.4 471 31.8
Psat4g009920 Pisum sativum HOM05D003426 ORTHO05D003816 1.3e-31 141.4 429 31.9
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 7.3e-30 135.6 363 33.1
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 6.2e-29 132.5 386 30.3
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 6.2e-29 132.5 368 32.1
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 6.9e-28 129.0 366 32.8
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 2.6e-27 127.1 369 31.2
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 2.6e-27 127.1 374 32.4
Psat4g009680 Pisum sativum HOM05D003426 ORTHO05D003816 9.9e-27 125.2 286 36.0
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 5.4e-25 119.4 398 31.7
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 7.1e-25 119.0 376 32.7
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 9.3e-25 118.6 381 31.5
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 1.2e-24 118.2 363 30.0
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 1.6e-24 117.9 423 28.6
Medtr4g129690 Medicago truncatula HOM05D003426 ORTHO05D003816 6.0e-24 115.9 397 30.2
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 7.9e-24 115.5 390 32.1
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 5.1e-23 112.8 387 30.5
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 6.6e-23 112.5 443 27.8
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 8.7e-23 112.1 381 31.2
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 1.9e-22 110.9 376 29.3
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 1.6e-21 107.8 413 29.8
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.6e-21 107.8 359 31.2
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 2.1e-21 107.5 382 29.1
Lalb_Chr13g0300811 Lupinus albus HOM05D003426 ORTHO05D003816 3.6e-21 106.7 366 33.6
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 6.2e-21 105.9 374 28.1
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 3.1e-20 103.6 291 31.6
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 3.1e-20 103.6 314 29.6
Glyma.17G072650 Glycine max HOM05D003426 ORTHO05D003816 6.9e-20 102.4 256 38.7
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 9.0e-20 102.1 333 28.5
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 9.0e-20 102.1 337 29.7
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 2.6e-19 100.5 314 30.6
TPR.G24886 Trifolium pratense HOM05D003426 ORTHO05D003816 5.8e-19 99.4 433 28.6
Glyma.17G072800 Glycine max HOM05D003426 ORTHO05D003816 7.6e-19 99.0 279 35.5
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 9.9e-19 98.6 203 33.5
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 1.7e-18 97.8 434 27.4
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 2.2e-18 97.4 477 29.8
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 2.9e-18 97.1 439 28.0
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 2.9e-18 97.1 379 28.8
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 2.9e-18 97.1 356 27.8
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 3.8e-18 96.7 390 27.4
Psat6g228520 Pisum sativum HOM05D003426 ORTHO05D003816 1.9e-17 94.4 298 29.2
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 3.2e-17 93.6 338 28.4
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 5.5e-17 92.8 323 28.8
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 5.5e-17 92.8 338 28.1
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 5.5e-17 92.8 331 30.5
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 5.5e-17 92.8 391 26.3
SGA_v2.0_scaffold265G46098 Striga asiatica HOM05D003426 ORTHO05D003816 5.5e-17 92.8 338 29.9
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 7.1e-17 92.4 423 28.4
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 9.3e-17 92.0 272 30.5
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 1.2e-16 91.7 362 28.5
VMungo1215G0444 Vigna mungo HOM05D003426 ORTHO05D003816 1.2e-16 91.7 393 29.0
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 2.1e-16 90.9 337 28.2
Psat4g010040 Pisum sativum HOM05D003426 ORTHO05D003816 2.7e-16 90.5 270 33.7
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 3.5e-16 90.1 245 30.2
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 1.0e-15 88.6 212 32.5
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 1.8e-15 87.8 243 30.0
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 1.8e-15 87.8 348 27.3
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 2.3e-15 87.4 402 26.6
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 3.0e-15 87.0 434 27.0
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.9e-15 86.7 408 25.5
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 6.7e-15 85.9 181 35.4
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 8.7e-15 85.5 410 25.1
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 1.1e-14 85.1 324 31.8
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 1.1e-14 85.1 410 26.1
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 1.9e-14 84.3 345 27.0
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 2.5e-14 84.0 345 26.1
Medtr3g045840 Medicago truncatula HOM05D003426 ORTHO05D003816 2.5e-14 84.0 155 41.9
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 2.5e-14 84.0 195 33.8
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 4.3e-14 83.2 232 30.6
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 7.4e-14 82.4 397 24.7
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 7.4e-14 82.4 366 26.8
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 1.3e-13 81.6 330 27.6
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 1.6e-13 81.3 207 30.9
Phvul.010G050200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 1.6e-13 81.3 230 35.7
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.1e-13 80.9 280 27.5
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 2.8e-13 80.5 308 26.3
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 3.7e-13 80.1 194 29.9
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 4.8e-13 79.7 392 26.5
Sopen10g019310 Solanum pennellii HOM05D003426 ORTHO05D003816 4.8e-13 79.7 175 32.0
RcHm_v2.0_Chr2g0085511 Rosa chinensis HOM05D003426 ORTHO05D003816 6.2e-13 79.3 426 26.5
Glyma.17G193101 Glycine max HOM05D003426 ORTHO05D003816 8.1e-13 79.0 160 38.8
Solyc10g048140.2 Solanum lycopersicum HOM05D003426 ORTHO05D003816 8.1e-13 79.0 175 32.0
CARHR184730 Cardamine hirsuta HOM05D012895 ORTHO05D014428 1.4e-12 78.2 364 24.5
FAN26G0769 Fragaria x ananassa HOM05D003426 ORTHO05D003816 1.8e-12 77.8 408 27.9
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 1.8e-12 77.8 341 25.5
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 1.8e-12 77.8 359 26.7
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.8e-12 77.8 164 35.4
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 2.4e-12 77.4 327 26.6
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 2.4e-12 77.4 319 27.6
HanXRQChr10g0313661 Helianthus annuus HOM05D003426 ORTHO05D003816 4.0e-12 76.6 327 27.2
FAN23G3106 Fragaria x ananassa HOM05D003426 ORTHO05D003816 5.3e-12 76.3 387 26.1
Dinv17422 Davidia involucrata HOM05D003426 ORTHO05D003816 9.0e-12 75.5 197 33.0
Glyma.17G072700 Glycine max HOM05D003426 ORTHO05D003816 9.0e-12 75.5 110 49.1
Rhsim02G0212600 Rhododendron simsii HOM05D003426 ORTHO05D003816 2.6e-11 73.9 333 27.6
FvH4_1g00800 Fragaria vesca HOM05D003426 ORTHO05D003816 3.4e-11 73.6 264 29.5
Zm00001eb388770 Zea mays HOM05D003426 ORTHO05D003816 3.4e-11 73.6 261 26.1
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 4.5e-11 73.2 195 29.7
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 1.0e-10 72.0 190 30.5
Nitab4.5_0000123g0610 Nicotiana tabacum HOM05D003426 ORTHO05D007302 1.7e-10 71.2 185 29.2
PSO561G0041 Papaver somniferum HOM05D003426 ORTHO05D003816 1.7e-10 71.2 167 35.3
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 1.7e-10 71.2 312 26.3
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 2.2e-10 70.9 185 28.6
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 2.9e-10 70.5 289 23.9
ClCG06G012490 Citrullus lanatus HOM05D003426 ORTHO05D003816 3.8e-10 70.1 349 24.6
MELO3C010212.2 Cucumis melo HOM05D003426 ORTHO05D003816 3.8e-10 70.1 354 25.7
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 3.8e-10 70.1 322 27.3
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 4.9e-10 69.7 251 30.3
FAN28G0527 Fragaria x ananassa HOM05D003426 ORTHO05D003816 1.1e-09 68.6 318 27.4
AUR62024799 Chenopodium quinoa HOM05D016866 ORTHO05D003816 1.4e-09 68.2 321 27.1
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 1.4e-09 68.2 379 24.3
Os06g0651300 Oryza sativa ssp. japonica HOM05D003426 ORTHO05D003816 1.4e-09 68.2 157 28.7
PSO111G0039 Papaver somniferum HOM05D003426 ORTHO05D003816 1.4e-09 68.2 165 34.5
PGSC0003DMG400040160 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.4e-09 68.2 187 31.0
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 2.5e-09 67.4 342 26.9
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 3.2e-09 67.0 387 26.9
QL02p018764 Quercus lobata HOM05D003426 ORTHO05D003816 3.2e-09 67.0 185 28.1
PGSC0003DMG400040189 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.2e-09 67.0 140 32.1
Thhalv10000536m.g Eutrema salsugineum HOM05D012895 ORTHO05D014428 4.2e-09 66.6 329 26.4
Nitab4.5_0011705g0030 Nicotiana tabacum HOM05D003426 ORTHO05D003816 4.2e-09 66.6 89 44.9
CsaV3_2G007580 Cucumis sativus L. HOM05D003426 ORTHO05D003816 7.1e-09 65.9 214 26.6
DCAR_029285 Daucus carota HOM05D000650 ORTHO05D007302 7.1e-09 65.9 149 28.9
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 9.3e-09 65.5 203 25.6
Actinidia14135 Actinidia chinensis HOM05D022929 ORTHO05D003816 1.2e-08 65.1 171 29.2
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 1.2e-08 65.1 195 30.3
Sc18g0002970 Simmondsia chinensis HOM05D003426 ORTHO05D003816 1.2e-08 65.1 178 30.3
PSO675G7028 Papaver somniferum HOM05D003426 ORTHO05D003816 1.6e-08 64.7 188 34.6
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 1.6e-08 64.7 152 36.8
EL10Ac2g02492 Beta vulgaris HOM05D016866 ORTHO05D003816 2.1e-08 64.3 189 34.9
SalBow6G1286 Salvia bowleyana HOM05D000650 ORTHO05D007302 2.1e-08 64.3 207 27.1
Actinidia10526 Actinidia chinensis HOM05D003426 ORTHO05D003816 3.5e-08 63.5 354 22.9
DCAR_001849 Daucus carota HOM05D000650 ORTHO05D007302 6.0e-08 62.8 211 28.0
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 7.9e-08 62.4 144 31.9
PSO675G1450 Papaver somniferum HOM05D003426 ORTHO05D003816 7.9e-08 62.4 59 52.5
CSS0041479 Camellia sinensis var. sinensis HOM05D000650 ORTHO05D007302 1.3e-07 61.6 145 29.0
Lsat_1_v5_gn_5_90221 Lactuca sativa HOM05D029854 ORTHO05D003816 1.3e-07 61.6 337 24.9
Nitab4.5_0004586g0030 Nicotiana tabacum HOM05D000650 ORTHO05D007302 1.3e-07 61.6 152 30.3
CSS0027727 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 1.8e-07 61.2 105 40.0
Lsat_1_v5_gn_5_89740 Lactuca sativa HOM05D003426 ORTHO05D003816 1.8e-07 61.2 205 29.3
Lsat_1_v5_gn_5_90161 Lactuca sativa HOM05D029854 ORTHO05D003816 1.8e-07 61.2 276 25.0
Nitab4.5_0002290g0120 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.8e-07 61.2 146 31.5
QL02p093542 Quercus lobata HOM05D001418 ORTHO05D002038 1.8e-07 61.2 91 38.5
vmacro01871 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 1.8e-07 61.2 146 30.1
Phvul.002G214600 Phaseolus vulgaris HOM05D000650 ORTHO05D007302 2.3e-07 60.8 143 25.9
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 3.0e-07 60.5 372 25.3
Oeu063550.2 Olea europaea HOM05D000650 ORTHO05D007302 3.0e-07 60.5 155 29.0
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 3.9e-07 60.1 252 29.4
SEGI_37162 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 3.9e-07 60.1 169 29.6
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 5.1e-07 59.7 360 24.4
Sp4g02940 Schrenkiella parvula HOM05D012895 ORTHO05D014428 5.1e-07 59.7 356 25.0
PGSC0003DMG400038550 Solanum tuberosum HOM05D003426 ORTHO05D003816 5.1e-07 59.7 58 56.9
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 6.7e-07 59.3 186 29.0
RcHm_v2.0_Chr6g0270151 Rosa chinensis HOM05D000650 ORTHO05D007302 6.7e-07 59.3 240 25.8
Atru.chr6.1308 Acer truncatum HOM05D000650 ORTHO05D007302 8.7e-07 58.9 181 24.9
Lj5A228T44 Lonicera japonica HOM05D003426 ORTHO05D007302 8.7e-07 58.9 185 27.6
Aqoxy6G00819 Aquilegia oxysepala HOM05D000650 ORTHO05D000735 1.1e-06 58.5 162 27.2
FAN15G2135 Fragaria x ananassa HOM05D000650 ORTHO05D007302 1.1e-06 58.5 168 28.6
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 1.1e-06 58.5 246 28.5
AT2G24030 Arabidopsis thaliana HOM05D012895 ORTHO05D014428 1.5e-06 58.2 336 24.4
SGA_v2.0_scaffold83G26387 Striga asiatica HOM05D000650 ORTHO05D000735 1.5e-06 58.2 159 27.7
A04p18340 Brassica napus HOM05D012895 ORTHO05D014428 2.5e-06 57.4 350 25.1
BraA04t17445Z Brassica rapa HOM05D012895 ORTHO05D014428 2.5e-06 57.4 350 25.1
CAN.G531.4 Capsicum annuum HOM05D000650 ORTHO05D007302 2.5e-06 57.4 177 25.4
CDE02G2039 Ceratophyllum demersum HOM05D051348 ORTHO05D003816 2.5e-06 57.4 327 26.3
QL11p025817 Quercus lobata HOM05D000650 ORTHO05D007302 2.5e-06 57.4 136 27.9
CSS0023548 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D007302 3.3e-06 57.0 143 28.7
RcHm_v2.0_Chr6g0270171 Rosa chinensis HOM05D000650 ORTHO05D007302 3.3e-06 57.0 191 23.0
Lj5A228T42 Lonicera japonica HOM05D000650 ORTHO05D007302 4.3e-06 56.6 167 26.3
Nitab4.5_0014595g0010 Nicotiana tabacum HOM05D000650 ORTHO05D007302 4.3e-06 56.6 165 27.9
RcHm_v2.0_Chr6g0270121 Rosa chinensis HOM05D000650 ORTHO05D007302 4.3e-06 56.6 172 29.1
AUR62032422 Chenopodium quinoa HOM05D016866 ORTHO05D003816 5.7e-06 56.2 242 28.1
ClCG02G014420 Citrullus lanatus HOM05D003426 ORTHO05D003816 5.7e-06 56.2 325 24.0
FAN24G3507 Fragaria x ananassa HOM05D000650 ORTHO05D007302 5.7e-06 56.2 159 26.4
Nn1g05634 Nelumbo nucifera HOM05D000650 ORTHO05D000735 5.7e-06 56.2 144 31.2
Dinv24138 Davidia involucrata HOM05D000650 ORTHO05D007302 7.4e-06 55.8 195 25.6
Prupe.8G073000 Prunus persica HOM05D000650 ORTHO05D007302 7.4e-06 55.8 155 25.8
AL4G14080 Arabidopsis lyrata HOM05D012895 ORTHO05D014428 9.6e-06 55.5 412 22.8
QL11p029412 Quercus lobata HOM05D000650 ORTHO05D007302 9.6e-06 55.5 161 24.8


User provided reference genes

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