Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 4.8e-48 194.1 95 100.0
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 7.9e-35 150.2 93 77.4
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 7.9e-35 150.2 94 80.9
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 6.3e-32 140.6 96 74.0
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 1.8e-31 139.0 95 73.7
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 2.6e-30 135.2 96 72.9
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 1.3e-29 132.9 96 70.8
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 8.5e-29 130.2 96 68.8
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 1.6e-27 125.9 95 61.1
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 6.1e-27 124.0 95 61.1
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 8.0e-27 123.6 90 63.3
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 2.3e-26 122.1 94 61.7
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 6.7e-26 120.6 95 60.0
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 1.2e-25 119.8 93 66.7
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.5e-25 119.4 89 62.9
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 2.6e-25 118.6 98 67.3
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 3.3e-25 118.2 96 62.5
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 4.4e-25 117.9 89 64.0
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.1e-23 111.7 90 60.0
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.1e-23 111.7 90 60.0
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 1.6e-22 109.4 91 61.5
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 2.0e-22 109.0 92 56.5
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.7e-22 108.6 89 56.2
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 1.7e-21 105.9 95 56.8
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 2.2e-21 105.5 81 65.4
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 8.5e-21 103.6 86 55.8
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 5.5e-20 100.9 89 58.4
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.1e-19 99.0 92 51.1
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.6e-19 98.2 92 51.1
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.7e-19 97.8 92 51.1
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 4.7e-19 97.8 93 58.1
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 1.0e-18 96.7 86 54.7
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 6.8e-18 94.0 86 60.5
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.5e-17 92.8 89 56.2
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 2.6e-17 92.0 86 57.0
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.3e-16 89.7 84 52.4
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 6.3e-16 87.4 91 50.5
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 8.3e-16 87.0 87 49.4
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 8.3e-16 87.0 91 51.6
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.1e-15 86.7 87 48.3
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 7.0e-15 84.0 88 55.7
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.2e-14 83.2 87 46.0
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 1.2e-14 83.2 87 49.4
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.6e-14 82.8 90 44.4
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 3.5e-14 81.6 104 43.3
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.0e-13 80.1 86 52.3
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 3.8e-13 78.2 88 47.7
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 3.8e-13 78.2 88 48.9
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 5.0e-13 77.8 80 48.8
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.5e-12 76.3 91 42.9
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.5e-12 75.5 88 48.9
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 7.2e-12 73.9 69 58.0
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 9.5e-12 73.6 88 47.7
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 9.5e-12 73.6 84 51.2
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 4.7e-11 71.2 88 47.7
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.1e-11 70.9 89 46.1
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 6.1e-11 70.9 73 49.3
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 1.4e-10 69.7 90 45.6
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 2.3e-10 68.9 88 44.3
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 2.3e-10 68.9 90 47.8
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 3.0e-10 68.6 88 46.6
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 3.0e-10 68.6 90 45.6
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 3.0e-10 68.6 84 50.0
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 4.0e-10 68.2 97 44.3
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 4.0e-10 68.2 88 47.7
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 5.2e-10 67.8 89 46.1
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 5.2e-10 67.8 89 40.4
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.8e-10 67.4 86 41.9
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.8e-10 67.4 86 41.9
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.8e-10 67.4 89 40.4
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 8.8e-10 67.0 50 64.0
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-09 66.6 89 41.6
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 1.5e-09 66.2 85 40.0
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 2.0e-09 65.9 95 40.0
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 3.4e-09 65.1 88 45.5
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 7.5e-09 63.9 84 39.3
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.8e-09 63.5 87 43.7
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 9.8e-09 63.5 87 43.7
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.7e-08 61.6 87 42.5
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 4.9e-08 61.2 78 47.4
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 6.3e-08 60.8 89 42.7
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 8.3e-08 60.5 100 42.0
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 1.4e-07 59.7 90 42.2
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 1.4e-07 59.7 86 40.7
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.8e-07 59.3 67 44.8
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.8e-07 59.3 86 40.7
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 3.1e-07 58.5 88 44.3
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 3.1e-07 58.5 95 38.9
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 9.2e-07 57.0 88 42.0
PGSC0003DMG400018456 Solanum tuberosum HOM05D007096 ORTHO05D008288 9.2e-07 57.0 84 46.4
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.2e-06 56.6 88 46.6
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.2e-06 56.6 85 43.5
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-06 56.6 88 42.0
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 1.6e-06 56.2 90 40.0
Solyc05g007650.1 Solanum lycopersicum HOM05D007096 ORTHO05D008288 2.0e-06 55.8 84 45.2
Lsat_1_v5_gn_8_52521 Lactuca sativa HOM05D007096 ORTHO05D008288 2.7e-06 55.5 74 47.3
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 2.7e-06 55.5 89 39.3
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 2.7e-06 55.5 98 35.7
Gohir.D11G034500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 4.5e-06 54.7 103 39.8
CARHR019480 Cardamine hirsuta HOM05D011140 ORTHO05D013248 7.8e-06 53.9 90 38.9
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 7.8e-06 53.9 84 42.9
Os08g0438701 Oryza sativa ssp. japonica HOM05D007096 ORTHO05D008288 7.8e-06 53.9 83 42.2


User provided reference genes

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