Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 8.1e-126 453.8 230 100.0
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 2.4e-117 425.6 230 91.7
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 4.0e-117 424.9 230 90.0
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 7.6e-116 420.6 230 90.4
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 2.2e-115 419.1 231 91.8
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 2.9e-115 418.7 230 90.4
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 4.2e-114 414.8 237 89.9
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 1.2e-113 413.3 227 90.3
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 2.7e-113 412.1 236 88.1
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 4.6e-113 411.4 233 87.6
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 6.0e-113 411.0 234 87.2
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.3e-112 409.8 238 86.1
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 8.7e-112 407.1 230 87.4
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.5e-111 405.6 234 86.3
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 4.3e-111 404.8 234 85.9
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 9.7e-111 403.7 232 87.1
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.3e-110 403.3 230 86.1
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.3e-110 403.3 230 86.1
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 1.6e-110 402.9 236 84.7
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 2.8e-110 402.1 236 83.9
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 3.7e-110 401.7 236 84.3
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 4.8e-110 401.4 230 86.5
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 4.8e-110 401.4 230 86.5
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 6.3e-110 401.0 233 86.3
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 6.3e-110 401.0 234 85.9
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 8.2e-110 400.6 232 84.9
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.1e-109 400.2 242 83.9
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 1.4e-109 399.8 232 84.5
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 2.4e-109 399.1 240 83.8
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 3.1e-109 398.7 238 83.6
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 5.3e-109 397.9 234 83.8
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 6.9e-109 397.5 235 84.7
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 9.0e-109 397.1 234 84.6
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 9.0e-109 397.1 233 84.5
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 9.0e-109 397.1 230 83.9
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 9.0e-109 397.1 233 84.1
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 1.2e-108 396.7 232 83.6
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 1.5e-108 396.4 233 84.1
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 3.4e-108 395.2 233 84.5
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 3.4e-108 395.2 233 84.1
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 7.7e-108 394.0 230 84.8
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 7.7e-108 394.0 233 84.5
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 1.0e-107 393.7 235 83.0
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 1.7e-107 392.9 224 85.3
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.7e-107 392.9 224 85.3
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 1.7e-107 392.9 224 85.3
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 2.2e-107 392.5 239 81.2
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 2.2e-107 392.5 236 82.2
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.0e-107 391.3 224 84.4
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 5.0e-107 391.3 228 82.5
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.5e-107 390.6 224 84.4
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.5e-107 390.6 224 84.4
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 3.2e-106 388.7 234 84.2
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 5.5e-106 387.9 239 80.8
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 7.2e-106 387.5 232 82.3
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 1.2e-105 386.7 239 80.8
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 1.6e-105 386.3 233 79.8
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 2.1e-105 386.0 236 82.2
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 2.7e-105 385.6 245 80.4
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 3.6e-105 385.2 233 82.0
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 4.6e-105 384.8 229 83.4
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 4.6e-105 384.8 233 80.3
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 1.0e-104 383.6 234 80.8
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 1.8e-104 382.9 225 82.7
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 2.3e-104 382.5 232 81.0
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 3.9e-104 381.7 225 82.2
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 5.1e-104 381.3 228 82.0
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 1.9e-103 379.4 225 81.3
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 2.5e-103 379.0 229 79.5
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 4.3e-103 378.3 223 82.1
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 5.7e-103 377.9 230 83.0
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 2.2e-102 375.9 238 79.0
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 6.3e-102 374.4 228 78.9
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 1.1e-101 373.6 233 79.4
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 1.1e-101 373.6 231 79.2
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 2.4e-101 372.5 231 78.8
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.2e-100 370.2 219 81.7
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.3e-99 366.7 234 77.4
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 1.7e-99 366.3 232 76.3
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 1.7e-99 366.3 232 77.2
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 2.2e-99 365.9 227 78.0
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 6.5e-99 364.4 232 76.7
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 8.5e-99 364.0 225 78.7
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 1.1e-98 363.6 232 77.2
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 3.2e-98 362.1 222 77.0
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 7.2e-98 360.9 227 75.8
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 7.2e-98 360.9 232 76.7
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 7.2e-98 360.9 227 75.8
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 9.4e-98 360.5 233 75.5
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 1.2e-97 360.1 227 78.0
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.2e-97 360.1 225 79.1
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 1.6e-97 359.8 227 77.5
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.6e-97 359.8 231 74.9
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 2.7e-97 359.0 233 75.5
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 2.7e-97 359.0 232 75.4
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 3.6e-97 358.6 227 77.1
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 6.1e-97 357.8 224 77.2
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 1.0e-96 357.1 228 75.4
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 2.0e-95 352.8 233 74.7
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 3.3e-95 352.1 233 78.1
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 3.3e-95 352.1 227 76.7
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 4.4e-95 351.7 224 76.3
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 1.3e-94 350.1 224 77.2
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 2.8e-94 349.0 228 73.2
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 2.8e-94 349.0 321 59.2
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 8.2e-94 347.4 232 77.6
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 1.4e-93 346.7 304 60.2
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 1.0e-91 340.5 253 67.2
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 1.0e-91 340.5 229 73.4
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 1.3e-91 340.1 230 70.9
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 5.0e-91 338.2 232 73.7
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.6e-89 333.2 187 86.6
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 2.1e-89 332.8 222 69.4
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 5.2e-88 328.2 230 70.9
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 6.3e-86 321.2 217 68.2
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 4.1e-85 318.5 192 80.2
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 5.3e-85 318.2 217 66.4
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 1.6e-84 316.6 232 69.0
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 2.6e-84 315.8 232 68.1
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 8.5e-83 310.8 188 78.2
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 8.5e-83 310.8 227 63.9
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 1.9e-82 309.7 198 77.3
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 3.2e-82 308.9 198 77.3
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 3.2e-82 308.9 232 68.1
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 4.0e-72 275.4 168 80.4
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.3e-70 270.4 197 69.0
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 2.3e-67 259.6 166 77.7
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 5.5e-66 255.0 228 59.2
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 6.8e-56 221.5 155 65.8
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 5.8e-55 218.4 217 50.2
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 1.9e-42 176.8 118 70.3
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 1.9e-37 160.2 97 77.3
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 2.1e-36 156.8 189 37.6
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 5.2e-32 142.1 97 78.4
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 4.0e-24 115.9 205 33.7
ATR0705G105 Amborella trichopoda HOM05D005951 ORTHO05D007025 1.1e-08 64.7 45 62.2


User provided reference genes

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