Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0000402 Lotus japonicus HOM05D006662 ORTHO05D008378 2.0e-135 485.7 236 100.0
arahy.Tifrunner.gnm1.ann1.WYH7K2 Arachis hypogaea HOM05D006662 ORTHO05D008378 3.5e-84 315.5 206 73.8
arahy.Tifrunner.gnm1.ann1.XIH6CG Arachis hypogaea HOM05D006662 ORTHO05D008378 4.6e-84 315.1 206 74.3
Ca_18646_v3 Cicer arietinum L. HOM05D006662 ORTHO05D008378 7.4e-82 307.8 204 75.0
VMungo0251G2580 Vigna mungo HOM05D006662 ORTHO05D008378 3.1e-80 302.4 201 73.6
Glyma.02G136700 Glycine max HOM05D006662 ORTHO05D008378 1.2e-79 300.4 202 72.3
Lalb_Chr05g0218931 Lupinus albus HOM05D006662 ORTHO05D008378 2.9e-78 295.8 204 71.6
TPR.G23518 Trifolium pratense HOM05D006662 ORTHO05D008378 1.3e-73 280.4 206 69.4
Phvul.003G295900 Phaseolus vulgaris HOM05D006662 ORTHO05D008378 1.7e-73 280.0 202 70.3
Glyma.07G208750 Glycine max HOM05D006662 ORTHO05D000003 5.3e-72 275.0 190 72.1
Lalb_Chr16g0384501 Lupinus albus HOM05D006662 ORTHO05D008378 6.5e-70 268.1 206 66.0
Cfa004939 Carpinus fangiana HOM05D006662 ORTHO05D008378 3.2e-69 265.8 205 65.4
CiPaw.05G058200 Carya illinoinensis HOM05D006662 ORTHO05D008378 3.2e-69 265.8 204 65.7
Manes.17G095800 Manihot esculenta HOM05D006662 ORTHO05D008378 1.0e-67 260.8 208 61.1
Cpa.g.sc62.73 Carica papaya HOM05D006662 ORTHO05D008378 1.1e-66 257.3 209 60.3
Medtr4g087160 Medicago truncatula HOM05D006662 ORTHO05D008378 1.5e-66 256.9 166 74.7
ClCG09G017640 Citrullus lanatus HOM05D006662 ORTHO05D008378 3.3e-66 255.8 208 61.5
Psat7g120680 Pisum sativum HOM05D006662 ORTHO05D008378 4.4e-66 255.4 200 64.0
QL11p039030 Quercus lobata HOM05D006662 ORTHO05D008378 4.4e-66 255.4 208 61.1
PGR142G1799 Punica granatum HOM05D006662 ORTHO05D008378 7.4e-66 254.6 201 61.2
CANSAT25G1076 Cannabis sativa HOM05D006662 ORTHO05D008378 9.7e-66 254.2 204 63.7
Sed0006883 Sechium edule HOM05D006662 ORTHO05D008378 1.3e-65 253.8 206 61.2
QL11p040314 Quercus lobata HOM05D006662 ORTHO05D008378 2.2e-65 253.1 207 60.9
Potri.009G108200 Populus trichocarpa HOM05D006662 ORTHO05D008378 2.8e-65 252.7 204 61.3
Eucgr.I01209 Eucalyptus grandis HOM05D006662 ORTHO05D008378 8.2e-65 251.1 217 59.4
Prupe.8G113800 Prunus persica HOM05D006662 ORTHO05D008378 8.2e-65 251.1 205 63.9
MD05G1073200 Malus domestica HOM05D006662 ORTHO05D008378 1.1e-64 250.8 202 63.4
Nn6g32129 Nelumbo nucifera HOM05D006662 ORTHO05D008378 1.1e-64 250.8 196 61.7
Haze_02471 Corylus avellana HOM05D006662 ORTHO05D008378 1.8e-64 250.0 228 58.3
MD10G1087700 Malus domestica HOM05D006662 ORTHO05D008378 1.2e-63 247.3 204 63.7
GSVIVG01031844001 Vitis vinifera HOM05D006662 ORTHO05D008378 1.2e-63 247.3 175 66.9
Thecc.02G093600 Theobroma cacao HOM05D006662 ORTHO05D008378 3.5e-63 245.7 210 60.5
Hma1.2p1_0584F.1_g183200 Hydrangea macrophylla HOM05D006662 ORTHO05D008378 5.9e-63 245.0 197 61.4
Manes.15G144700 Manihot esculenta HOM05D006662 ORTHO05D008378 5.9e-63 245.0 198 60.6
TWI75G0095 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 5.9e-63 245.0 206 58.3
FvH4_2g07110 Fragaria vesca HOM05D006662 ORTHO05D008378 7.7e-63 244.6 201 61.7
FAN15G0063 Fragaria x ananassa HOM05D006662 ORTHO05D008378 7.7e-63 244.6 201 61.2
CsaV3_2G014240 Cucumis sativus L. HOM05D006662 ORTHO05D008378 1.7e-62 243.4 210 60.0
MELO3C021923.2 Cucumis melo HOM05D006662 ORTHO05D008378 2.2e-62 243.0 210 60.0
Gohir.D12G026500 Gossypium hirsutum HOM05D006662 ORTHO05D008378 2.9e-62 242.7 207 60.4
FAN20G1592 Fragaria x ananassa HOM05D006662 ORTHO05D008378 3.8e-62 242.3 201 61.2
RcHm_v2.0_Chr6g0259611 Rosa chinensis HOM05D006662 ORTHO05D008378 6.5e-62 241.5 203 61.1
TAR625G0716 Trochodendron aralioides HOM05D006662 ORTHO05D008378 6.5e-62 241.5 192 61.5
Ciclev10029278m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.9e-61 240.0 212 59.4
Gohir.A12G027000 Gossypium hirsutum HOM05D006662 ORTHO05D008378 7.2e-61 238.0 209 59.8
HanXRQChr16g0505251 Helianthus annuus HOM05D006662 ORTHO05D008378 1.2e-60 237.3 177 65.0
Oeu034074.1 Olea europaea HOM05D006662 ORTHO05D008378 1.2e-60 237.3 172 66.9
TWI79G0535 Tripterygium wilfordii HOM05D006662 ORTHO05D008378 1.6e-60 236.9 172 65.1
Lsat_1_v5_gn_7_87521 Lactuca sativa HOM05D006662 ORTHO05D008378 2.1e-60 236.5 183 64.5
Oeu034073.1 Olea europaea HOM05D006662 ORTHO05D008378 2.7e-60 236.1 172 66.3
Peaxi162Scf00016g01334 Petunia axillaris HOM05D006662 ORTHO05D008378 2.7e-60 236.1 177 63.3
Sed0017443 Sechium edule HOM05D006662 ORTHO05D008378 2.7e-60 236.1 201 58.7
Ah.01g019950 Amaranthus hybridus HOM05D006662 ORTHO05D008378 1.0e-59 234.2 210 58.1
Cc02_g18370 Coffea canephora HOM05D006662 ORTHO05D008378 1.0e-59 234.2 189 61.9
AUR62016649 Chenopodium quinoa HOM05D006662 ORTHO05D008378 1.8e-59 233.4 201 56.2
DCAR_022073 Daucus carota HOM05D006662 ORTHO05D008378 2.3e-59 233.0 181 63.0
COL.COLO4_11735 Corchorus olitorius HOM05D006662 ORTHO05D008378 3.0e-59 232.6 204 58.8
Sabra09G0082500 Salix brachista HOM05D006662 ORTHO05D008378 6.7e-59 231.5 192 57.8
Ciclev10029277m.g Citrus clementina HOM05D006662 ORTHO05D008378 1.5e-58 230.3 212 57.5
THA.LOC104807344 Tarenaya hassleriana HOM05D006662 ORTHO05D008378 2.0e-58 229.9 214 57.0
TAR381G0443 Trochodendron aralioides HOM05D006662 ORTHO05D008378 2.0e-58 229.9 201 56.2
Gorai.008G026800 Gossypium raimondii HOM05D006662 ORTHO05D008378 5.7e-58 228.4 234 53.4
CSS0011742 Camellia sinensis var. sinensis HOM05D006662 ORTHO05D008378 7.5e-58 228.0 175 63.4
AUR62011410 Chenopodium quinoa HOM05D006662 ORTHO05D008378 1.7e-57 226.9 200 55.5
Sc18g0004870 Simmondsia chinensis HOM05D006662 ORTHO05D008378 2.2e-57 226.5 199 58.3
MSTRG.20127 Avicennia marina HOM05D006662 ORTHO05D008378 3.7e-57 225.7 178 58.4
MSTRG.16773 Avicennia marina HOM05D006662 ORTHO05D008378 4.8e-57 225.3 201 55.2
unitig_60.g25450 Utricularia gibba HOM05D006662 ORTHO05D008378 6.3e-57 224.9 174 59.8
Nitab4.5_0001401g0110 Nicotiana tabacum HOM05D006662 ORTHO05D008378 8.2e-57 224.6 170 62.9
MBI16_g19891_MAGBIO Magnolia biondii HOM05D006662 ORTHO05D008378 1.1e-56 224.2 178 58.4
PGSC0003DMG400025927 Solanum tuberosum HOM05D006662 ORTHO05D008378 1.4e-56 223.8 171 63.2
Nitab4.5_0013034g0030 Nicotiana tabacum HOM05D006662 ORTHO05D008378 4.1e-56 222.2 170 62.4
Sopen01g051110 Solanum pennellii HOM05D006662 ORTHO05D008378 9.1e-56 221.1 165 64.8
ECA236G2218 Erigeron canadensis HOM05D001803 ORTHO05D001686 2.6e-55 219.5 176 61.4
Solyc01g108910.4 Solanum lycopersicum HOM05D006662 ORTHO05D008378 2.6e-55 219.5 165 64.8
SalBow6G2487 Salvia bowleyana HOM05D006662 ORTHO05D008378 5.9e-55 218.4 229 47.6
Atru.chr5.2838 Acer truncatum HOM05D006662 ORTHO05D008378 7.7e-55 218.0 165 64.8
SGA_v2.0_scaffold32G13129 Striga asiatica HOM05D006662 ORTHO05D008378 7.7e-55 218.0 187 57.2
Aa31LG8G13410 Aethionema arabicum HOM05D006662 ORTHO05D008378 3.2e-53 212.6 214 53.7
Thhalv10022827m.g Eutrema salsugineum HOM05D006662 ORTHO05D008378 3.2e-53 212.6 194 58.2
ECA234G3259 Erigeron canadensis HOM05D006662 ORTHO05D008378 4.2e-53 212.2 180 56.1
A03p45640 Brassica napus HOM05D006662 ORTHO05D008378 7.2e-53 211.5 206 53.4
Sp3g29170 Schrenkiella parvula HOM05D006662 ORTHO05D008378 7.2e-53 211.5 178 60.7
BcaC01g03048 Brassica carinata HOM05D006662 ORTHO05D008378 9.4e-53 211.1 204 53.4
C03p56690 Brassica napus HOM05D006662 ORTHO05D008378 9.4e-53 211.1 204 53.4
BolC3t17953H Brassica oleracea HOM05D006662 ORTHO05D008378 9.4e-53 211.1 204 53.4
AL3G47680 Arabidopsis lyrata HOM05D006662 ORTHO05D008378 2.7e-52 209.5 171 63.2
BraA03t13696Z Brassica rapa HOM05D006662 ORTHO05D008378 3.6e-52 209.1 206 52.9
Oeu057667.1 Olea europaea HOM05D006662 ORTHO05D008378 2.3e-51 206.5 166 62.7
AT2G15890 Arabidopsis thaliana HOM05D006662 ORTHO05D008378 4.0e-51 205.7 174 60.3
CARHR106220 Cardamine hirsuta HOM05D006662 ORTHO05D008378 4.0e-51 205.7 174 60.3
EL10Ac9g21803 Beta vulgaris HOM05D006662 ORTHO05D008378 5.2e-51 205.3 206 54.9
BcaB08g34616 Brassica carinata HOM05D006662 ORTHO05D008378 6.8e-51 204.9 174 60.3
CDE04G2620 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 8.8e-51 204.5 201 50.2
Duzib132G0812 Durio zibethinus HOM05D006662 ORTHO05D008378 2.6e-50 203.0 201 52.2
CDE02G2985 Ceratophyllum demersum HOM05D006662 ORTHO05D008378 4.4e-50 202.2 196 52.0
Carub.0003s2977 Capsella rubella HOM05D006662 ORTHO05D008378 5.7e-50 201.8 176 58.0
PSO541G1188 Papaver somniferum HOM05D006662 ORTHO05D008378 5.7e-50 201.8 210 49.0
Migut.B00297 Erythranthe guttata HOM05D006662 ORTHO05D008378 7.0e-48 194.9 149 59.1
ATR0733G082 Amborella trichopoda HOM05D006662 ORTHO05D008378 3.5e-47 192.6 191 51.3
PSO675G4443 Papaver somniferum HOM05D006662 ORTHO05D008378 5.9e-47 191.8 210 47.6
Aqoxy6G00923 Aquilegia oxysepala HOM05D006662 ORTHO05D008378 1.0e-46 191.0 174 55.7
Hund06197 Selenicereus undatus HOM05D006662 ORTHO05D008378 1.2e-39 167.5 231 42.4
Zm00001eb214110 Zea mays HOM05D006662 ORTHO05D008378 2.6e-34 149.8 172 45.9
Zm00001eb058550 Zea mays HOM05D006662 ORTHO05D008378 3.4e-34 149.4 202 40.6
HPP92_017773 Vanilla planifolia HOM05D006662 ORTHO05D008378 1.7e-33 147.1 198 39.9
Dinv23602 Davidia involucrata HOM05D000546 ORTHO05D000398 6.4e-33 145.2 118 62.7
Lj9A364T65 Lonicera japonica HOM05D006662 ORTHO05D008378 8.3e-33 144.8 230 40.4
SEGI_00093 Sequoiadendron giganteum HOM05D006662 ORTHO05D008378 1.2e-31 141.0 175 45.1
Actinidia00472 Actinidia chinensis HOM05D006662 ORTHO05D008378 3.5e-31 139.4 161 46.6
Duzib052G0855 Durio zibethinus HOM05D006662 ORTHO05D008378 7.0e-24 115.2 100 60.0
Peaxi162Scf00068g00075 Petunia axillaris HOM05D006662 ORTHO05D008378 1.1e-21 107.8 90 55.6
Pp3c25_14850 Physcomitrium patens HOM05D006662 ORTHO05D008378 9.5e-21 104.8 185 33.5
SMO351G0555 Selaginella moellendorffii HOM05D006662 ORTHO05D008378 6.2e-20 102.1 183 32.2
Mapoly0184s0005 Marchantia polymorpha HOM05D006662 ORTHO05D008378 1.8e-19 100.5 199 30.7
AagrBONN_evm.TU.Sc2ySwM_117.2125 Anthoceros agrestis HOM05D006662 ORTHO05D008378 3.1e-19 99.8 205 32.2
HanXRQChr16g0505241 Helianthus annuus HOM05D000009 ORTHO05D000008 2.0e-18 97.1 97 51.5
Os03g0765500 Oryza sativa ssp. japonica HOM05D006662 ORTHO05D008378 5.1e-14 82.4 132 34.8
Peaxi162Scf00140g10022 Petunia axillaris HOM05D006662 ORTHO05D008378 1.9e-13 80.5 101 42.6
Pp3c5_28350 Physcomitrium patens HOM05D006662 ORTHO05D008378 2.2e-09 67.0 173 26.0
Rhsim11G0170000 Rhododendron simsii HOM05D006662 ORTHO05D008378 2.9e-09 66.6 105 33.3


User provided reference genes

Program Settings