Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0000284 Lotus japonicus HOM05D003188 ORTHO05D003602 7.2e-62 240.4 117 100.0
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 5.0e-23 111.3 76 80.3
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 6.2e-21 104.4 76 71.1
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 1.8e-20 102.8 76 71.1
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 5.2e-20 101.3 77 72.7
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 1.7e-18 96.3 57 84.2
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 2.9e-18 95.5 87 58.6
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 1.9e-17 92.8 76 69.7
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 3.2e-17 92.0 76 67.1
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 4.6e-16 88.2 76 67.1
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 2.3e-15 85.9 88 56.8
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 6.6e-15 84.3 67 73.1
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 8.6e-15 84.0 73 67.1
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 1.5e-14 83.2 76 63.2
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 3.3e-14 82.0 67 70.1
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 6.8e-12 74.3 83 59.0
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 2.0e-11 72.8 79 54.4
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 4.4e-11 71.6 80 52.5
Potri.015G051000 Populus trichocarpa HOM05D003188 ORTHO05D003602 2.9e-10 68.9 79 54.4
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 2.9e-10 68.9 76 53.9
TPR.G11885 Trifolium pratense HOM05D003998 ORTHO05D005144 3.7e-10 68.6 75 61.3
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 6.4e-10 67.8 89 51.7
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 8.3e-10 67.4 79 54.4
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 4.1e-09 65.1 68 58.8
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 9.2e-09 63.9 69 59.4
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 2.7e-08 62.4 65 52.3
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 2.3e-07 59.3 62 54.8
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 2.3e-07 59.3 65 50.8
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 3.0e-07 58.9 58 56.9
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 3.0e-07 58.9 68 50.0
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 3.9e-07 58.5 77 48.1
Dinv38591 Davidia involucrata HOM05D003188 ORTHO05D003602 5.1e-07 58.2 64 57.8
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 1.1e-06 57.0 77 50.6
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 1.1e-06 57.0 75 53.3
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 1.5e-06 56.6 82 47.6
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 1.9e-06 56.2 66 57.6
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 1.9e-06 56.2 66 54.5
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 1.9e-06 56.2 77 48.1
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 2.5e-06 55.8 61 55.7
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 5.6e-06 54.7 62 58.1
Cpa.g.sc13.60 Carica papaya HOM05D003188 ORTHO05D003602 5.6e-06 54.7 56 53.6
Cpa.g.sc79.52 Carica papaya HOM05D003188 ORTHO05D003602 5.6e-06 54.7 75 49.3
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 5.6e-06 54.7 90 43.3
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 5.6e-06 54.7 70 57.1
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 5.6e-06 54.7 65 52.3
Atru.chr3.1254 Acer truncatum HOM05D003188 ORTHO05D003602 7.3e-06 54.3 96 40.6
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 7.3e-06 54.3 100 41.0
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 7.3e-06 54.3 63 50.8
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 9.5e-06 53.9 66 54.5
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.5e-06 53.9 66 54.5
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.5e-06 53.9 66 54.5
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 9.5e-06 53.9 79 53.2
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 9.5e-06 53.9 67 53.7


User provided reference genes

Program Settings