Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 3.1e-201 704.9 356 100.0
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 7.3e-158 560.8 356 80.1
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 4.7e-157 558.1 350 79.7
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 2.0e-155 552.7 356 78.1
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 9.9e-155 550.4 350 79.1
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 3.9e-151 538.5 356 77.0
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 8.7e-151 537.3 357 77.3
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 1.3e-149 533.5 356 76.7
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 1.4e-148 530.0 356 76.1
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 5.8e-147 524.6 356 76.4
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 2.4e-140 502.7 313 80.5
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 1.1e-126 457.2 357 65.0
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 2.9e-122 442.6 350 63.7
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 3.8e-122 442.2 359 64.1
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.0e-119 434.1 359 62.7
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 5.1e-119 431.8 350 63.7
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 6.7e-119 431.4 362 63.8
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 1.6e-117 426.8 357 61.1
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 4.8e-117 425.2 362 63.3
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 8.2e-117 424.5 354 62.1
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.4e-116 422.9 359 60.2
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.4e-116 422.9 358 62.3
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 4.1e-116 422.2 357 60.2
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.2e-115 420.6 358 62.3
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.5e-115 420.2 357 59.9
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.2e-114 416.4 355 60.3
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 1.4e-113 413.7 363 60.3
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 4.2e-113 412.1 352 58.2
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 3.6e-112 409.1 337 61.1
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 3.9e-111 405.6 357 57.1
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 6.7e-111 404.8 349 60.5
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.5e-110 403.7 349 58.7
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.5e-110 403.7 349 58.7
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 2.5e-110 402.9 349 59.6
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 7.4e-110 401.4 349 57.6
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 3.7e-109 399.1 351 58.1
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.5e-107 393.7 348 60.1
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 4.5e-107 392.1 343 58.0
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 8.5e-106 387.9 341 59.5
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.1e-105 387.5 358 55.3
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 7.2e-105 384.8 302 66.9
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 9.4e-105 384.4 449 48.3
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 9.4e-105 384.4 348 56.0
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 4.7e-104 382.1 349 54.7
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 6.1e-104 381.7 358 55.3
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 5.7e-102 375.2 357 54.1
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 7.4e-102 374.8 357 53.8
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 2.8e-101 372.9 349 57.0
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.7e-101 372.5 399 54.4
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.9e-98 362.8 349 52.7
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 3.8e-98 362.5 391 50.1
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 5.5e-97 358.6 356 52.2
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 7.2e-97 358.2 296 62.5
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 9.4e-97 357.8 319 59.6
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 9.7e-94 347.8 341 51.3
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 1.2e-91 340.9 326 56.7
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 3.5e-91 339.3 285 61.4
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 3.5e-91 339.3 350 53.7
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 1.7e-90 337.0 339 51.3
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 2.9e-90 336.3 409 48.2
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 8.5e-90 334.7 349 50.4
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 5.5e-89 332.0 331 52.6
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 7.2e-89 331.6 353 50.4
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 9.4e-89 331.3 351 53.0
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.6e-88 330.5 328 52.4
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 6.1e-88 328.6 346 50.3
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 2.6e-86 323.2 244 66.0
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 2.6e-86 323.2 299 55.5
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 9.8e-86 321.2 360 48.3
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 1.3e-85 320.9 344 49.1
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.7e-85 320.5 411 44.5
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 1.7e-85 320.5 411 44.5
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 8.3e-85 318.2 346 51.7
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.4e-84 317.4 351 48.4
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 3.1e-84 316.2 352 47.7
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 4.1e-84 315.8 351 48.4
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 9.1e-84 314.7 349 49.6
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 2.0e-83 313.5 186 85.5
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.3e-82 310.8 349 49.0
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.3e-82 310.8 347 49.0
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 1.3e-82 310.8 352 45.2
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 8.5e-82 308.1 350 44.0
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.5e-81 306.6 419 45.1
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 3.2e-81 306.2 354 45.8
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 4.2e-81 305.8 354 46.0
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 4.2e-81 305.8 349 47.9
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 5.5e-81 305.4 346 47.1
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 7.2e-81 305.1 307 51.8
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 9.4e-81 304.7 351 47.3
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 1.2e-80 304.3 349 45.8
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 3.6e-80 302.8 342 45.6
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 4.0e-79 299.3 265 58.1
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 5.2e-79 298.9 290 56.9
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 1.5e-78 297.4 354 45.8
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 1.3e-77 294.3 341 49.0
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.4e-76 290.8 350 44.0
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 2.4e-76 290.0 239 61.9
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 2.7e-75 286.6 351 43.0
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.0e-74 284.6 347 46.7
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 1.7e-74 283.9 288 54.2
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 1.7e-74 283.9 352 45.7
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.9e-73 280.4 350 42.9
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 4.3e-73 279.3 355 43.1
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 5.6e-73 278.9 355 43.1
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 5.6e-73 278.9 351 42.5
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 9.5e-73 278.1 351 43.0
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 2.8e-72 276.6 351 43.0
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 6.8e-71 271.9 351 45.9
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 8.9e-71 271.6 345 42.3
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.5e-70 270.8 289 49.8
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 3.7e-69 266.2 345 42.0
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 3.7e-69 266.2 345 42.0
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 6.4e-69 265.4 345 41.7
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 6.4e-69 265.4 267 53.9
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 8.3e-69 265.0 258 59.3
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 2.4e-68 263.5 347 42.4
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.7e-67 260.0 298 44.0
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 3.5e-67 259.6 327 44.3
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.0e-66 256.5 317 50.8
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 6.6e-66 255.4 280 47.9
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 3.3e-65 253.1 360 40.6
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 2.8e-64 250.0 322 43.2
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.6e-64 249.6 359 44.8
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 4.7e-64 249.2 342 40.6
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 8.0e-64 248.4 262 49.6
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 8.0e-64 248.4 266 51.1
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 1.0e-63 248.1 348 42.5
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.3e-61 241.1 304 42.8
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 2.9e-61 240.0 356 39.3
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 3.2e-60 236.5 308 41.2
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 1.3e-58 231.1 388 36.9
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 9.5e-57 224.9 259 47.5
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.6e-56 224.2 304 39.8
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 3.6e-56 223.0 183 62.8
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 8.1e-56 221.9 196 56.1
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 8.9e-55 218.4 309 40.1
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.5e-54 217.6 348 39.7
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 3.4e-54 216.5 343 42.3
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 7.1e-52 208.8 160 63.8
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 4.3e-49 199.5 452 34.1
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 2.1e-48 197.2 261 43.3
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 5.2e-47 192.6 348 37.1
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 5.1e-42 176.0 134 64.9
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 1.5e-41 174.5 192 50.5
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.6e-38 163.7 170 55.9
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 4.4e-38 162.9 137 61.3
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 8.4e-37 158.7 141 57.4
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.4e-36 157.9 343 34.1
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 9.3e-36 155.2 128 62.5
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 1.3e-32 144.8 178 46.6
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 1.1e-31 141.7 155 49.7
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 1.8e-31 141.0 153 50.3
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 4.5e-30 136.3 110 61.8
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 1.3e-29 134.8 104 61.5
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 6.0e-27 125.9 121 52.9
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 1.3e-26 124.8 109 54.1
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 3.3e-25 120.2 212 36.3
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.6e-24 117.9 110 59.1
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.8e-23 114.4 72 76.4
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.0e-23 113.2 77 66.2
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.3e-21 108.2 302 31.8
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 2.3e-18 97.4 92 54.3
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 1.1e-15 88.6 119 43.7
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 1.9e-12 77.8 84 51.2
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.2e-12 77.0 71 56.3
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 3.0e-10 70.5 45 68.9
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 3.9e-10 70.1 85 54.1
Haze_06777 Corylus avellana HOM05D001248 ORTHO05D001183 6.9e-07 59.3 301 21.9
Actinidia16726 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.2e-06 58.5 45 64.4
CBR_g20333 Chara braunii HOM05D001248 ORTHO05D001183 7.6e-06 55.8 297 22.9
Zm00001eb118330 Zea mays HOM05D001248 ORTHO05D001183 7.6e-06 55.8 303 22.8
SalBow1G7691 Salvia bowleyana HOM05D001248 ORTHO05D001183 1.0e-05 55.5 311 20.6
PGSC0003DMG402008294 Solanum tuberosum HOM05D004223 ORTHO05D004792 1.0e-05 55.5 52 59.6


User provided reference genes

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