Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 3.8e-123 444.9 229 100.0
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 5.1e-96 354.8 218 79.4
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 3.3e-95 352.1 229 78.2
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 2.0e-92 342.8 214 77.1
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 7.7e-92 340.9 219 74.9
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 1.0e-91 340.5 225 75.1
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 1.7e-91 339.7 221 76.5
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 1.1e-90 337.0 221 76.0
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 2.5e-90 335.9 221 75.6
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.1e-89 332.8 216 74.5
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 7.9e-89 330.9 217 74.2
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 7.9e-89 330.9 222 72.5
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.0e-88 330.5 217 74.2
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.0e-88 330.5 216 74.5
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.0e-88 330.5 216 74.5
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.4e-88 330.1 217 74.2
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.4e-88 330.1 217 74.2
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 2.3e-88 329.3 219 70.8
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 3.0e-88 328.9 224 70.5
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 5.1e-88 328.2 216 71.8
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 2.0e-87 326.2 218 70.6
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 2.5e-87 325.9 217 71.9
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 3.3e-87 325.5 214 69.6
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 2.2e-86 322.8 217 73.3
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 4.8e-86 321.6 215 72.6
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 8.2e-86 320.9 216 72.2
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 1.1e-85 320.5 216 70.4
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 3.1e-85 318.9 217 71.4
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 3.1e-85 318.9 220 68.6
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 4.1e-85 318.5 223 67.7
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 5.3e-85 318.2 217 70.0
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 9.1e-85 317.4 214 69.2
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 9.1e-85 317.4 228 67.1
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 1.2e-84 317.0 225 69.3
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 1.5e-84 316.6 229 69.4
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 2.0e-84 316.2 219 69.9
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 4.5e-84 315.1 218 72.5
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 7.7e-84 314.3 221 73.8
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 7.7e-84 314.3 223 65.9
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 1.0e-83 313.9 223 70.0
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 1.3e-83 313.5 216 69.4
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.3e-83 313.5 214 70.6
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 2.9e-83 312.4 220 66.4
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 3.8e-83 312.0 222 67.6
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 5.0e-83 311.6 215 69.8
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 5.0e-83 311.6 220 69.1
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 5.0e-83 311.6 224 65.6
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 8.5e-83 310.8 220 67.7
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.1e-82 310.5 228 65.4
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.9e-82 309.7 215 68.4
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.5e-82 309.3 219 68.9
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.2e-82 308.9 215 68.4
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.2e-82 308.9 215 68.4
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 3.2e-82 308.9 215 67.0
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 4.2e-82 308.5 217 66.8
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 7.2e-82 307.8 215 68.4
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 9.4e-82 307.4 223 67.3
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 9.4e-82 307.4 226 65.5
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 1.6e-81 306.6 218 67.0
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.1e-81 306.2 219 70.3
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.1e-81 306.2 215 68.8
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.7e-81 305.8 215 67.4
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 3.6e-81 305.4 217 66.8
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 3.6e-81 305.4 222 67.6
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 1.0e-80 303.9 218 69.3
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.0e-80 303.9 212 70.3
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 1.4e-80 303.5 213 69.5
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 3.0e-80 302.4 214 67.3
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 3.9e-80 302.0 226 68.6
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 5.1e-80 301.6 246 63.4
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 8.8e-80 300.8 217 68.2
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 1.5e-79 300.1 218 67.4
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.5e-79 300.1 199 70.4
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 2.6e-79 299.3 222 65.8
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 9.7e-79 297.4 244 62.7
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 9.7e-79 297.4 217 66.8
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 4.8e-78 295.0 224 66.1
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.4e-77 293.5 223 62.3
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 4.1e-77 292.0 223 61.9
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 5.3e-77 291.6 218 62.8
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 7.0e-77 291.2 209 67.0
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 2.6e-76 289.3 195 72.3
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 5.9e-76 288.1 216 63.0
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 7.7e-76 287.7 214 63.6
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 2.2e-75 286.2 216 61.6
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 2.2e-75 286.2 216 61.6
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 2.2e-75 286.2 216 61.6
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.2e-75 286.2 242 59.5
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.4e-74 283.5 223 61.0
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.4e-74 283.5 191 73.3
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.4e-74 283.5 199 68.8
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.4e-74 283.5 199 68.8
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 1.9e-74 283.1 216 60.6
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 1.9e-74 283.1 216 60.6
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.9e-74 283.1 219 66.7
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 9.4e-74 280.8 192 71.9
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 2.1e-73 279.6 216 60.2
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 4.7e-73 278.5 216 59.3
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 1.0e-72 277.3 277 54.9
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 1.4e-72 276.9 220 65.5
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 3.9e-72 275.4 216 58.3
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 3.3e-71 272.3 209 64.6
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 5.7e-71 271.6 223 55.6
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.7e-70 270.0 223 57.8
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 2.2e-70 269.6 223 54.7
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 2.2e-70 269.6 210 66.2
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 3.7e-70 268.9 225 59.1
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 4.8e-70 268.5 183 72.1
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-69 267.3 223 54.7
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.1e-69 265.4 216 59.3
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 4.1e-69 265.4 186 69.4
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 5.3e-69 265.0 223 57.0
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 7.0e-69 264.6 224 54.5
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 7.0e-69 264.6 224 54.5
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 9.1e-69 264.2 214 58.4
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 2.0e-68 263.1 224 54.0
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 2.0e-68 263.1 224 54.0
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 2.0e-68 263.1 224 54.0
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-66 257.3 221 56.6
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.1e-66 257.3 221 56.6
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 7.2e-66 254.6 210 60.0
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.2e-65 253.8 226 57.5
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.1e-65 253.1 204 56.9
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 6.1e-65 251.5 216 59.7
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.2e-60 237.3 150 73.3
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 1.3e-59 233.8 152 72.4
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.7e-59 233.4 224 54.5
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 2.2e-59 233.0 191 55.5
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.9e-59 232.6 183 60.1
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 3.8e-59 232.3 227 54.6
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 5.0e-59 231.9 187 57.8
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 1.5e-58 230.3 156 69.2
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.0e-56 224.2 154 68.2
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.6e-55 219.5 203 53.7
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 7.0e-53 211.5 213 47.4
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 7.0e-53 211.5 216 51.9
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.0e-51 207.6 209 49.8
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.7e-51 206.8 215 46.5
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 5.0e-51 205.3 172 58.7
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 2.1e-49 199.9 220 46.4
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 6.1e-49 198.4 177 56.5
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-47 194.1 217 52.1
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 1.7e-46 190.3 157 56.7
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 4.0e-40 169.1 118 67.8
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 1.1e-37 161.0 181 45.3
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.9e-34 150.2 113 62.8
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 1.9e-34 150.2 113 63.7
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 5.2e-32 142.1 90 73.3
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 8.9e-32 141.4 86 77.9
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.0e-31 140.2 123 55.3
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 3.5e-28 129.4 147 44.2
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 7.3e-26 121.7 152 45.4
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 7.3e-26 121.7 152 45.4
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 4.9e-22 109.0 203 34.0
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 1.2e-20 104.4 68 75.0
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 2.7e-20 103.2 68 70.6
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 6.2e-17 92.0 67 64.2
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.7e-14 84.0 93 48.4
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 8.4e-14 81.6 69 59.4
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 6.0e-12 75.5 52 61.5
PGSC0003DMG400000930 Solanum tuberosum HOM05D001742 ORTHO05D001689 6.2e-09 65.5 212 27.4
CAN.G1190.2 Capsicum annuum HOM05D001742 ORTHO05D001689 2.4e-08 63.5 221 28.1
Solyc07g044990.3 Solanum lycopersicum HOM05D001742 ORTHO05D001689 6.9e-08 62.0 208 28.4
arahy.Tifrunner.gnm1.ann1.XF8MQ5 Arachis hypogaea HOM05D001742 ORTHO05D001689 9.0e-08 61.6 209 28.7
Sopen07g023520 Solanum pennellii HOM05D001742 ORTHO05D001689 9.0e-08 61.6 208 28.8
CANSAT64G0602 Cannabis sativa HOM05D001742 ORTHO05D001689 1.5e-07 60.8 208 28.4
ATR0763G143 Amborella trichopoda HOM05D001742 ORTHO05D001689 3.4e-07 59.7 205 27.3
Gohir.D11G065500 Gossypium hirsutum HOM05D001742 ORTHO05D001689 4.4e-07 59.3 205 27.8
Gorai.007G070700 Gossypium raimondii HOM05D001742 ORTHO05D001689 4.4e-07 59.3 205 27.8
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 5.8e-07 58.9 50 56.0
Duzib264G0736 Durio zibethinus HOM05D001742 ORTHO05D001689 9.9e-07 58.2 208 26.9
TAR626G0148 Trochodendron aralioides HOM05D001742 ORTHO05D001689 9.9e-07 58.2 206 28.6
Thecc.01G167300 Theobroma cacao HOM05D001742 ORTHO05D001689 1.3e-06 57.8 208 27.9
CAN.G275.19 Capsicum annuum HOM05D001742 ORTHO05D001689 2.2e-06 57.0 221 26.7
THA.LOC104812714 Tarenaya hassleriana HOM05D001742 ORTHO05D001689 2.9e-06 56.6 205 25.4
Zm00001eb370150 Zea mays HOM05D001742 ORTHO05D001689 4.9e-06 55.8 207 26.1
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 6.4e-06 55.5 38 65.8


User provided reference genes

Program Settings