Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 6.4e-117 424.1 213 100.0
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 4.7e-35 152.1 216 48.1
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.8e-34 150.2 214 44.9
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 5.2e-34 148.7 214 43.9
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 6.8e-34 148.3 231 45.5
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.5e-33 147.1 209 47.8
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.4e-33 146.0 167 50.9
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 3.4e-33 146.0 231 43.3
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 3.4e-33 146.0 163 52.1
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 4.4e-33 145.6 232 43.5
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 5.7e-33 145.2 198 50.5
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 7.5e-33 144.8 210 45.2
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 9.8e-33 144.4 195 45.6
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.3e-32 144.1 202 48.0
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 3.7e-32 142.5 193 46.1
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 4.9e-32 142.1 231 42.9
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.1e-31 141.0 213 46.0
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.4e-31 140.6 210 45.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.4e-31 140.6 210 45.7
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 1.4e-31 140.6 187 47.6
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.8e-31 140.2 248 42.7
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 4.1e-31 139.0 221 43.0
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 7.0e-31 138.3 231 42.0
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 9.2e-31 137.9 164 53.7
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 9.2e-31 137.9 198 48.5
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 1.2e-30 137.5 225 44.0
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.6e-30 137.1 232 43.1
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 4.5e-30 135.6 216 46.3
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.7e-29 133.7 231 43.3
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 2.3e-29 133.3 191 47.6
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 6.6e-29 131.7 201 45.8
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 6.6e-29 131.7 200 47.0
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 6.6e-29 131.7 211 44.5
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 1.1e-28 131.0 197 46.2
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.1e-28 131.0 204 45.6
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 2.5e-28 129.8 244 41.0
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 2.5e-28 129.8 229 42.8
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 7.3e-28 128.3 153 47.7
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.2e-27 127.5 202 46.5
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 2.1e-27 126.7 193 43.0
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 2.1e-27 126.7 176 47.7
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 8.0e-27 124.8 215 44.2
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.0e-26 124.4 167 44.9
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 1.0e-26 124.4 163 45.4
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.0e-26 124.4 188 46.3
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.4e-26 124.0 197 43.7
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.4e-26 124.0 194 43.3
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 2.3e-26 123.2 209 41.6
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 4.0e-26 122.5 196 44.4
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 8.9e-26 121.3 194 47.4
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.9e-26 121.3 202 42.6
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 8.9e-26 121.3 245 40.0
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 8.9e-26 121.3 158 48.1
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.2e-25 120.9 183 43.7
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.0e-25 120.2 183 43.2
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 2.0e-25 120.2 206 44.2
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.6e-25 119.8 184 42.4
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 3.4e-25 119.4 192 43.2
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 4.4e-25 119.0 168 49.4
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.7e-25 118.6 202 42.6
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 5.7e-25 118.6 162 46.3
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 5.7e-25 118.6 205 42.0
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 7.5e-25 118.2 178 49.4
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.3e-24 117.5 202 42.1
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 2.2e-24 116.7 193 45.1
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 2.2e-24 116.7 167 47.9
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 2.9e-24 116.3 181 45.9
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 1.4e-23 114.0 220 38.6
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.8e-23 113.6 180 42.2
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.4e-23 113.2 196 41.8
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 4.1e-23 112.5 198 42.4
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.6e-22 110.5 196 42.9
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 2.7e-22 109.8 212 39.6
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 7.8e-22 108.2 215 40.5
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 7.8e-22 108.2 215 40.5
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.0e-21 107.8 231 39.4
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.3e-21 107.5 223 41.3
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.3e-21 107.5 145 49.7
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 1.7e-21 107.1 212 41.0
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 1.7e-21 107.1 205 40.5
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 2.3e-21 106.7 185 42.2
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 3.0e-21 106.3 198 40.9
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 3.0e-21 106.3 193 40.9
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 3.9e-21 105.9 221 38.5
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 5.0e-21 105.5 225 39.1
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 5.0e-21 105.5 155 48.4
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 1.9e-20 103.6 195 43.6
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 2.5e-20 103.2 190 41.1
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 2.5e-20 103.2 196 42.3
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 3.3e-20 102.8 211 39.3
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.3e-20 102.8 210 38.6
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.3e-20 102.4 210 38.6
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 4.3e-20 102.4 181 41.4
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 5.6e-20 102.1 151 44.4
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 7.3e-20 101.7 203 40.4
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 7.3e-20 101.7 171 43.3
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.6e-19 100.5 236 38.6
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 2.1e-19 100.1 152 45.4
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 2.1e-19 100.1 223 39.9
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 2.1e-19 100.1 152 43.4
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 2.8e-19 99.8 205 39.5
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 2.8e-19 99.8 205 39.5
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 3.6e-19 99.4 213 39.0
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 4.7e-19 99.0 202 42.6
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 4.7e-19 99.0 245 35.9
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 8.0e-19 98.2 205 40.0
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 8.0e-19 98.2 224 40.6
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.0e-18 97.8 230 39.1
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.4e-18 97.4 220 36.4
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.3e-18 96.7 196 38.3
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.1e-18 96.3 255 35.3
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 8.9e-18 94.7 202 39.1
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.2e-17 94.4 118 51.7
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 1.5e-17 94.0 162 45.7
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.6e-17 93.2 154 42.2
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.6e-17 93.2 167 39.5
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 4.4e-17 92.4 217 37.3
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.4e-17 92.4 165 40.0
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 4.4e-17 92.4 193 37.8
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 7.5e-17 91.7 204 41.2
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.3e-16 90.9 163 38.7
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 2.9e-16 89.7 117 49.6
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 3.7e-16 89.4 189 37.6
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 3.7e-16 89.4 240 36.2
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 8.3e-16 88.2 198 36.9
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.1e-15 87.8 192 42.2
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.1e-15 87.8 128 49.2
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.9e-15 87.0 237 35.0
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 7.0e-15 85.1 142 43.7
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 1.6e-14 84.0 214 37.9
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 4.6e-14 82.4 219 34.7
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 7.8e-14 81.6 178 37.6
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.0e-13 79.7 164 39.6
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.0e-13 79.7 236 31.8
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 6.6e-13 78.6 207 32.9
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 5.6e-12 75.5 142 40.8
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.2e-11 74.3 107 50.5
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.8e-10 70.5 71 57.7
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.3e-10 70.1 95 47.4
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 5.2e-10 68.9 247 33.6
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.2e-09 67.8 169 37.9
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 9.8e-09 64.7 202 33.2
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 9.8e-09 64.7 79 45.6
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.4e-07 60.1 151 33.1
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 9.2e-07 58.2 164 31.7
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.6e-06 57.4 119 37.0
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 6.0e-06 55.5 110 35.5


User provided reference genes

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