Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 2.5e-124 448.7 219 100.0
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 3.2e-55 219.2 189 67.2
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.6e-54 216.9 194 63.9
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.5e-52 210.3 208 59.1
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 1.9e-52 209.9 191 64.4
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.5e-52 209.5 194 61.9
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 3.7e-51 205.7 194 62.9
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 4.8e-51 205.3 192 59.9
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 6.3e-51 204.9 190 62.6
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 1.8e-50 203.4 206 56.8
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 3.1e-50 202.6 192 62.0
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 6.9e-50 201.4 189 60.8
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 9.1e-50 201.1 192 62.0
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 1.5e-49 200.3 195 60.0
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 2.0e-49 199.9 190 60.5
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 2.6e-49 199.5 187 61.5
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.4e-49 199.1 190 61.1
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 5.9e-49 198.4 191 61.8
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 7.7e-49 198.0 192 60.4
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.0e-48 197.6 192 60.4
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 1.7e-48 196.8 217 54.4
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 2.9e-48 196.1 192 60.9
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 2.9e-48 196.1 190 60.0
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 3.8e-48 195.7 190 60.0
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 6.5e-48 194.9 188 59.6
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 6.5e-48 194.9 190 60.0
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 8.5e-48 194.5 192 58.9
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 1.1e-47 194.1 192 59.4
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.1e-47 194.1 193 60.1
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 1.4e-47 193.7 188 59.0
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.5e-47 191.8 194 57.7
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 7.2e-47 191.4 190 58.9
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 2.1e-46 189.9 192 59.9
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.7e-46 189.5 191 58.1
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 3.6e-46 189.1 190 59.5
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 6.1e-46 188.3 193 58.5
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 7.9e-46 188.0 193 57.5
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 1.0e-45 187.6 194 55.7
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 1.0e-45 187.6 199 56.3
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.3e-45 186.4 191 60.2
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 2.3e-45 186.4 205 56.1
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 3.9e-45 185.7 192 56.8
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 5.1e-45 185.3 194 58.2
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 5.1e-45 185.3 195 56.9
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 5.1e-45 185.3 190 60.0
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 6.7e-45 184.9 193 56.0
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 6.7e-45 184.9 211 54.5
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 6.7e-45 184.9 206 54.4
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 6.7e-45 184.9 206 54.4
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 6.7e-45 184.9 192 56.8
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 8.8e-45 184.5 192 57.3
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 8.8e-45 184.5 193 58.5
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 1.1e-44 184.1 193 59.6
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.1e-44 184.1 192 56.2
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 1.1e-44 184.1 199 56.3
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.5e-44 183.7 195 57.9
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.0e-44 183.3 192 56.2
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 2.0e-44 183.3 187 58.8
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 2.0e-44 183.3 191 55.0
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 2.6e-44 183.0 193 59.1
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.6e-44 183.0 203 57.6
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 2.6e-44 183.0 194 57.2
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 2.6e-44 183.0 205 56.6
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 3.3e-44 182.6 190 56.8
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 5.7e-44 181.8 211 54.0
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 7.4e-44 181.4 186 57.5
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 9.7e-44 181.0 193 55.4
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 1.3e-43 180.6 192 57.8
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.7e-43 180.3 198 53.5
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.2e-43 179.9 209 54.1
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 2.8e-43 179.5 210 51.9
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 2.8e-43 179.5 196 56.6
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.7e-43 179.1 191 57.1
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 6.3e-43 178.3 188 57.4
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 8.2e-43 177.9 199 54.8
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 8.2e-43 177.9 197 54.3
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 1.1e-42 177.6 193 55.4
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 1.4e-42 177.2 191 57.1
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 3.1e-42 176.0 191 56.5
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 3.1e-42 176.0 193 55.4
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 4.1e-42 175.6 191 56.5
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 9.1e-42 174.5 203 53.7
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 9.1e-42 174.5 187 54.0
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.2e-41 174.1 192 54.2
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 3.4e-41 172.6 189 55.6
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 5.9e-41 171.8 191 56.0
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 2.2e-40 169.9 194 55.2
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 2.9e-40 169.5 203 52.7
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 3.8e-40 169.1 203 51.7
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 3.8e-40 169.1 212 52.4
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 1.1e-39 167.5 189 54.5
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.9e-39 166.8 206 52.4
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 2.5e-39 166.4 200 54.0
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 3.2e-39 166.0 190 53.2
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.2e-38 164.1 187 52.9
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 2.7e-38 162.9 202 51.0
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 2.7e-38 162.9 187 53.5
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 4.7e-38 162.2 197 51.8
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 1.8e-37 160.2 216 49.5
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 3.0e-37 159.5 189 52.9
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 6.7e-37 158.3 193 51.8
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 6.7e-37 158.3 188 50.0
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 1.1e-36 157.5 187 52.4
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 2.0e-36 156.8 188 51.1
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 1.7e-35 153.7 190 50.0
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.8e-35 152.9 199 48.7
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 2.8e-35 152.9 185 49.2
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 4.8e-35 152.1 221 45.2
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 6.3e-35 151.8 192 50.5
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 8.2e-35 151.4 188 53.7
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 4.1e-34 149.1 207 46.9
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 9.1e-34 147.9 189 51.3
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 2.0e-33 146.7 205 46.8
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 2.6e-33 146.4 201 46.8
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 5.9e-33 145.2 186 47.3
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.0e-32 144.4 187 47.6
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 1.0e-32 144.4 192 49.0
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 5.0e-32 142.1 189 48.7
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 8.5e-32 141.4 209 45.9
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 1.5e-31 140.6 194 47.9
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 1.5e-31 140.6 186 48.9
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 1.9e-31 140.2 201 46.8
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 2.5e-31 139.8 184 47.8
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 4.2e-31 139.0 219 43.8
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 7.2e-31 138.3 186 48.4
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 9.4e-31 137.9 193 45.1
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 9.4e-31 137.9 185 49.2
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.2e-30 137.5 198 47.0
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 3.6e-30 136.0 202 45.0
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 6.1e-30 135.2 186 47.8
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 6.1e-30 135.2 216 45.8
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 8.0e-30 134.8 184 44.6
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 8.0e-30 134.8 184 44.6
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 8.0e-30 134.8 184 44.6
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 1.0e-29 134.4 184 48.4
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 1.0e-29 134.4 156 53.8
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 1.0e-29 134.4 203 46.3
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 3.0e-29 132.9 185 44.3
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 4.0e-29 132.5 216 45.4
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 8.8e-29 131.3 184 46.2
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 1.2e-28 131.0 193 43.5
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 1.5e-28 130.6 189 45.5
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 2.6e-28 129.8 211 44.1
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 1.3e-27 127.5 190 44.7
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 3.7e-27 125.9 187 44.9
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 1.1e-26 124.4 208 45.2
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 1.8e-26 123.6 195 41.0
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 5.3e-26 122.1 189 46.6
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 7.0e-26 121.7 186 43.0
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 7.0e-26 121.7 199 41.7
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.0e-25 120.2 185 43.2
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 5.9e-25 118.6 184 42.9
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 3.8e-24 115.9 205 42.0
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 7.2e-23 111.7 154 45.5
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 9.4e-23 111.3 190 42.6
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 3.6e-22 109.4 193 43.0
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 4.0e-21 105.9 151 43.7
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 1.2e-20 104.4 201 41.3
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 4.4e-20 102.4 212 40.6
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 5.7e-20 102.1 193 39.9
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 2.8e-19 99.8 206 38.8
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 8.3e-19 98.2 203 37.4
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.2e-17 94.4 95 62.1
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 1.0e-16 91.3 222 33.3
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 1.0e-16 91.3 77 62.3
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 1.0e-16 91.3 169 41.4
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 2.2e-16 90.1 194 39.2
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 1.4e-13 80.9 168 39.9
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 2.2e-11 73.6 201 34.3
Aqoxy5G02026 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 9.2e-10 68.2 155 34.8
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 2.9e-08 63.2 159 33.3
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 2.9e-08 63.2 222 32.4
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 3.8e-08 62.8 159 35.2


User provided reference genes

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