Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 2.2e-147 525.8 302 100.0
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 8.7e-144 513.8 302 96.7
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 9.2e-53 211.5 320 49.7
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 6.0e-52 208.8 311 49.2
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 1.6e-49 200.7 315 51.1
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 2.8e-49 199.9 314 48.7
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 2.6e-47 193.4 328 50.0
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 4.4e-47 192.6 327 45.6
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 1.0e-43 181.4 331 43.8
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 1.3e-43 181.0 326 45.7
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 5.1e-43 179.1 325 45.5
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 5.6e-42 175.6 323 45.2
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 7.3e-42 175.3 338 45.9
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 7.3e-42 175.3 338 45.9
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 1.6e-41 174.1 335 45.1
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 2.8e-41 173.3 326 46.3
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 8.1e-41 171.8 320 43.8
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 8.1e-41 171.8 331 45.9
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 1.1e-40 171.4 328 41.5
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 1.8e-40 170.6 336 45.5
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 5.3e-40 169.1 332 39.5
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 1.3e-38 164.5 334 45.5
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 3.8e-38 162.9 344 39.8
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 1.4e-37 161.0 326 42.3
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 1.6e-36 157.5 323 45.2
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 4.6e-36 156.0 324 40.4
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 7.9e-36 155.2 316 44.0
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 1.6e-33 147.5 320 42.8
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 4.8e-33 146.0 329 43.5
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 5.3e-32 142.5 335 42.4
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 5.3e-32 142.5 355 34.9
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 1.3e-30 137.9 336 39.6
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 2.2e-30 137.1 308 38.0
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 2.7e-28 130.2 336 38.7
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.7e-28 130.2 331 39.3
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 2.7e-28 130.2 346 41.3
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 6.0e-28 129.0 329 39.2
SGA_v2.0_scaffold52G18904 Striga asiatica HOM05D007988 ORTHO05D009824 1.1e-26 124.8 312 41.0
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 5.6e-26 122.5 315 41.0
ECA232G2067 Erigeron canadensis HOM05D007988 ORTHO05D009824 2.1e-25 120.6 321 37.4
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 4.8e-25 119.4 355 38.6
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 6.2e-25 119.0 354 38.4
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 6.2e-25 119.0 351 35.9
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 4.0e-24 116.3 340 39.1
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 6.9e-24 115.5 335 43.3
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 1.2e-23 114.8 324 40.1
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 1.5e-23 114.4 313 39.3
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 1.5e-23 114.4 337 38.0
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.0e-23 114.0 226 40.3
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 2.2e-22 110.5 327 40.1
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 2.2e-22 110.5 348 38.2
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 2.2e-22 110.5 337 38.3
Dinv37735 Davidia involucrata HOM05D007988 ORTHO05D009824 8.4e-22 108.6 220 37.7
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 1.4e-21 107.8 382 33.5
MBI06_g32176_MAGBIO Magnolia biondii HOM05D007988 ORTHO05D009824 1.9e-21 107.5 355 35.2
CSS0018515 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 5.5e-21 105.9 165 47.3
Migut.C01082 Erythranthe guttata HOM05D007988 ORTHO05D009824 9.3e-21 105.1 331 39.9
Sed0016946 Sechium edule HOM05D007988 ORTHO05D009824 1.6e-20 104.4 320 34.1
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 1.0e-19 101.7 329 36.8
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 3.9e-19 99.8 231 35.9
EL10Ac1g01385 Beta vulgaris HOM05D007988 ORTHO05D009824 6.7e-19 99.0 370 35.1
AUR62007686 Chenopodium quinoa HOM05D007988 ORTHO05D009824 1.1e-18 98.2 373 35.9
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 1.3e-17 94.7 326 35.3
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 2.8e-17 93.6 326 35.3
Hund26769 Selenicereus undatus HOM05D007988 ORTHO05D009824 3.7e-17 93.2 363 36.4
Aqoxy5G02290 Aquilegia oxysepala HOM05D007988 ORTHO05D009824 6.9e-16 89.0 176 42.0
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 2.0e-15 87.4 344 31.1
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 1.3e-14 84.7 350 34.0
MELO3C008455.2 Cucumis melo HOM05D007988 ORTHO05D009824 2.2e-14 84.0 323 33.1
Lalb_Chr04g0253601 Lupinus albus HOM05D007988 ORTHO05D009824 1.9e-13 80.9 166 41.0
PGSC0003DMG400002385 Solanum tuberosum HOM05D007988 ORTHO05D009824 1.9e-13 80.9 175 42.3
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 2.1e-12 77.4 346 32.4
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.1e-12 77.4 169 40.8
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 6.1e-12 75.9 338 34.0
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 1.8e-11 74.3 349 31.2
Lalb_Chr08g0240981 Lupinus albus HOM05D007988 ORTHO05D009824 1.9e-10 70.9 185 35.7
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 3.3e-10 70.1 346 29.8
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 4.3e-10 69.7 349 29.5
ClCG08G006150 Citrullus lanatus HOM05D007988 ORTHO05D009824 7.4e-10 68.9 315 32.7
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 9.7e-10 68.6 339 29.8
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 9.7e-10 68.6 339 29.8
CsaV3_6G031310 Cucumis sativus L. HOM05D007988 ORTHO05D009824 2.2e-09 67.4 311 32.2
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 2.2e-09 67.4 363 29.5
Sed0000785 Sechium edule HOM05D007988 ORTHO05D009824 2.2e-09 67.4 174 38.5
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 5.3e-08 62.8 299 31.8
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 5.3e-08 62.8 299 31.8
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 5.3e-08 62.8 299 31.8
AUR62013453 Chenopodium quinoa HOM05D007988 ORTHO05D009824 3.4e-07 60.1 195 33.3
PSO528G0108 Papaver somniferum HOM05D047919 ORTHO05D050194 5.0e-06 56.2 211 37.4


User provided reference genes

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